PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G051800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 995aa    MW: 111784 Da    PI: 6.3102
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11764.9e-55121273117
                  CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           +e ++rwlk++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v+ l+cyYah+e+
  Sobic.006G051800.1.p  12 EEaRSRWLKPSEVYYILQNHERFPITHEAPKKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDSLSCYYAHGEQ 100
                           5569************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                           np fqrrc+w+Le ++e+ivlv+y+ev
  Sobic.006G051800.1.p 101 NPCFQRRCFWMLEPAYEHIVLVQYREV 127
                           *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.7587133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038599.3E-4713126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.8E-15421505IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.106.6E-7422513IPR013783Immunoglobulin-like fold
PfamPF018338.6E-7422492IPR002909IPT domain
SuperFamilySSF484033.42E-16449497IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-16613711IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-16616713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.751618710IPR020683Ankyrin repeat-containing domain
CDDcd002042.91E-9623710No hitNo description
PfamPF127961.7E-6634711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301651683IPR002110Ankyrin repeat
SMARTSM002489.7E-5651680IPR002110Ankyrin repeat
SMARTSM002484600690719IPR002110Ankyrin repeat
SMARTSM0001527771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602772801IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-6830877IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.712830859IPR000048IQ motif, EF-hand binding site
SMARTSM0001517831851IPR000048IQ motif, EF-hand binding site
PfamPF006120.015832850IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731853881IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-5854874IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MSQSFDINVL REEARSRWLK PSEVYYILQN HERFPITHEA PKKPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDS LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PAEPLSSLGY PNAICGNQYY SSISGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYHKNDGS LLSIPEVGHT CLQQNRTDNG NSKNKSGLNM ALKKIAEQLS  240
LGEDDDDYIY SNQAHSVGGD NQVKQIQQEG TQKVLSRNIA PSWEDVLHSS SGLPTSSIYQ  300
QSDVEYQKNS EYHPPECLDS SDLRIQLSAA KRFLLGPEAT IDSPSLNSAL RNRVNSVTDT  360
ISAYDSRFES SLNPDWQTKT PSTFQSNSQG SEITELFDHG HFEPYSREDT AFALQQTNKF  420
NIREISPEWA FSYEITKVII TGDFLCDPSN LCWAVMFGDS EVPAEIVQPG VLRCHTPLHS  480
SGNLRICITS GNREVCSEFK EFEFRSKPTS SSFTDIAPSS KYLKSSEELL LLAKFARMLL  540
SGNGSPEVPD GDPQSGQCPK LKMNEELWDR LIDELKVGCE NPLSSVDWIL EELLKSKLQQ  600
WLSAKLRGFN GTDFLSKHEQ GIIHLISALG YEWALSSVLS AGVGLNFRDS NGWTALHWAA  660
YFGREKMVAA LLAAGASATA VTDPTAQDPV GKTAAFLASE RGHTGLAGYL SEVSLTSYLA  720
SLTIEESDVS KGSAVVEAER AVESISQRSA QLHGGTEDEL SMKDSLAAVR NAAQAAARIQ  780
NAFRAFSFRK RQQKTARLRD EYGMTQEDIE ELAAASRLYH QSHASSGQFY DKAAVSIQKK  840
YKGWKGRKHF LNMRRNAVKI QAHVRGHQVR KKYRTIVSTV SVLEKVILRW RRKGHGLRGF  900
RAEQQPMVEA IEEDDEEDDD FDDDEAVKVF RRQKVDQAVK EAVSRVLSMV DSTEARMQYR  960
RMLEQFRQAT AELEGSNEVT SIFDSDLELL GINNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G051800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446301.20.0calmodulin-binding transcription activator 4
TrEMBLA0A1Z5RCD50.0A0A1Z5RCD5_SORBI; Uncharacterized protein (Fragment)
STRINGGRMZM2G143205_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-144Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains