PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G058400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 361aa    MW: 39070.1 Da    PI: 5.4532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G058400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.31.3e-2522114183
              trihelix   1 rWtkqevlaLiearremeerlr.rgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           rWt+qe+l+Lie++r +e++ r rg+            ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++
  Sobic.006G058400.1.p  22 RWTRQEILVLIEGKRVVERSGRgRGRgrvrgggggdggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGYAARKE 110
                           8**************99999885333556777777887********************************************9754433 PP

              trihelix  77 stcpyfd 83 
                              + f 
  Sobic.006G058400.1.p 111 ---ASFW 114
                           ...3444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-1122114No hitNo description
PROSITE profilePS500906.42292IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-52291IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSNAGGEGSR GVGTGRGSRL PRWTRQEILV LIEGKRVVER SGRGRGRGRV RGGGGGDGGA  60
EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE WERGYAARKE ASFWAMRNDA  120
RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR  180
RGVQGSGLFS SSEDEDDQDD DAATPSPTPT PTPTPAPAAA VAVPIPGEQA VPFFLDEMAR  240
ASSISVHVTE KTTDVPRQAS SEQAGTSKEK QPEQITEDSP AQCGQKRQRS DDNASGRATT  300
NLQGQLVEIL DRSSQMVAAQ LEAQNINSRL DREQRKDQVS SLLGVLGKVA DALYRIADKL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G058400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493560.0EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319043.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLA0A1B6PKF90.0A0A1B6PKF9_SORBI; Uncharacterized protein
STRINGGRMZM2G149590_P011e-176(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-41Trihelix family protein