PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G058400.3.p
Common NameSb06g014640, SORBIDRAFT_06g014640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 340aa    MW: 36796.6 Da    PI: 5.714
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G058400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.51.2e-2522114183
              trihelix   1 rWtkqevlaLiearremeerlr.rgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           rWt+qe+l+Lie++r +e++ r rg+            ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++
  Sobic.006G058400.3.p  22 RWTRQEILVLIEGKRVVERSGRgRGRgrvrgggggdggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGYAARKE 110
                           8**************99999885333556777777887********************************************9754433 PP

              trihelix  77 stcpyfd 83 
                              + f 
  Sobic.006G058400.3.p 111 ---ASFW 114
                           ...3444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-52291IPR009057Homeodomain-like
PROSITE profilePS500906.42292IPR017877Myb-like domain
PfamPF138374.5E-1122114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSNAGGEGSR GVGTGRGSRL PRWTRQEILV LIEGKRVVER SGRGRGRGRV RGGGGGDGGA  60
EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE WERGYAARKE ASFWAMRNDA  120
RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR  180
RGVQGSGLFS SSEDEDDQDD DAATPSPTPT PTPTPAPAAA VAVPIPVTEK TTDVPRQASS  240
EQAGTSKEKQ PEQITEDSPA QCGQKRQRSD DNASGRATTN LQGQLVEILD RSSQMVAAQL  300
EAQNINSRLD REQRKDQVSS LLGVLGKVAD ALYRIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G058400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-157EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319045.10.0trihelix transcription factor ASR3 isoform X3
TrEMBLA0A1B6PKG70.0A0A1B6PKG7_SORBI; Uncharacterized protein
STRINGSb06g014640.11e-165(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-41Trihelix family protein