PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G094500.1.p
Common NameSb06g017920, SORBIDRAFT_06g017920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 409aa    MW: 43139 Da    PI: 6.7139
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G094500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.6e-1377158286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   ++       +++fd+l+
  Sobic.006G094500.1.p  77 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVSG-------WQFFDRLD 158
                           *************************************87788876222667**************999988875.......88888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2275159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDDDDDVSHS LSPSPPSSSA LPVDGPVTVA AAPPGSAMAV ALPIHRTAAS LYASATGGGG  60
GGGSGGGGGG GGREDAWSDG ATSALIDAWG ERFVALGRGS LRHPQWQEVA DAVSSRDGYS  120
KAPKSDVQCK NRIDTLKKKY KVERAKPVSG WQFFDRLDFL LAPTYGNKPG SGGNGGGGGH  180
NSNSRSQMPG ALRVGFPQRS RTPLMPAAGS AAKRRAPSPE PSVSSESSDG FPPVPALPAV  240
NGKRKRTDEG RADDGGSSGD DRAQGLRELA QAIRRFGEAY ERVEAAKLEQ AAEMERRRMD  300
FTQELESQRV QFFLNTQMEL TQAKNHASPA TAAVPAGGSS RRMSVVTDAG GSSNHHSRYR  360
ISHGDRHRHA PRPHYQQYHD NNNHAVAAAA SEGEQSDDEE DDYEEESQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.49516e-83root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G094500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686340.0BT068634.1 Zea mays full-length cDNA clone ZM_BFb0350B23 mRNA, complete cds.
GenBankEU9727390.0EU972739.1 Zea mays clone 387061 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447913.10.0trihelix transcription factor ASIL2
TrEMBLC5Y9860.0C5Y986_SORBI; Uncharacterized protein
STRINGSb06g017920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-33sequence-specific DNA binding transcription factors