PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G104000.2.p
Common NameSb06g018710, SORBIDRAFT_06g018710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 471aa    MW: 51819.7 Da    PI: 5.0886
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G104000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3358.89.9e-110744022327
                           XXXXXXXXXXXXXXXXXXXXXX..XXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..............tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgi 76 
                           +lkkrmwkdq ll++l++r+ +   ++  +              ++ k ++ +++++rrk+m raQDg++++Mlk+me+cna+GfvYg 
  Sobic.006G104000.2.p  74 DLKKRMWKDQLLLMKLEGRSGRDHRRHGGEgqlqlqpgstddvlIQVKDEESPENRYRRKAMLRAQDGVIRHMLKMMEACNARGFVYGV 162
                           8****************9998876555555567777778888777777777************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TT CS
                  EIN3  77 ipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfple 165
                           ++e+g pv+g+sdsLr+WWk++v fdr+gp+a+s    ++  ++g+     ++ s  h l+++qD+tlgSLLsal+qhc+ppqr+fpl+
  Sobic.006G104000.2.p 163 VDETGVPVSGSSDSLRGWWKDEVGFDRAGPMALSAL--DQECPGGSPM---AAASFLHGLHDIQDSTLGSLLSALIQHCEPPQRSFPLD 246
                           *********************************977..5666665444...489*********************************** PP

                           T--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTT CS
                  EIN3 166 kgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqe 253
                           +g++pPWWPtG+e+wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+ p+++++r+l++qsk+lq+kmsa++ +a+++v+ qe
  Sobic.006G104000.2.p 247 RGLAPPWWPTGREAWWGMQGdAPAHQGPPPYRKPHDLKKAWKISLLSAVIKHLTPRFDQMRKLVWQSKRLQHKMSARDADAWSKVITQE 335
                           ***************************************************************************************** PP

                           TT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
                  EIN3 254 ekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsr 327
                           e++ ++ +       +  + + l++e+++d +g  +    ++  ++  a ++ v+krk+k +++   ++k+++ 
  Sobic.006G104000.2.p 336 EALDRRAQ-------RALQITPLDEEEEDDDDGGPDAGADASGVDSPLAAAQHVEKRKRKGTDDGEHKAKGAVA 402
                           *9875332.......23444556666666777777777778888888899999999999999988888877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.7E-11374336No hitNo description
Gene3DG3DSA:1.10.3180.104.0E-62210344IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.23E-54214338IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MENYCESIDY YQKPCHAPNS PTMDDEPKDD GKGHKGKAVV DHHAGAADQH EQPESQEEFF  60
SDSESGCESI EVADLKKRMW KDQLLLMKLE GRSGRDHRRH GGEGQLQLQP GSTDDVLIQV  120
KDEESPENRY RRKAMLRAQD GVIRHMLKMM EACNARGFVY GVVDETGVPV SGSSDSLRGW  180
WKDEVGFDRA GPMALSALDQ ECPGGSPMAA ASFLHGLHDI QDSTLGSLLS ALIQHCEPPQ  240
RSFPLDRGLA PPWWPTGREA WWGMQGDAPA HQGPPPYRKP HDLKKAWKIS LLSAVIKHLT  300
PRFDQMRKLV WQSKRLQHKM SARDADAWSK VITQEEALDR RAQRALQITP LDEEEEDDDD  360
GGPDAGADAS GVDSPLAAAQ HVEKRKRKGT DDGEHKAKGA VAVPDGGQQA APVTHDSMLQ  420
GGLQRGGTAP DGSAAVHDDD MMLQSLLGIA DVVDMSDFPN SPIWQWGVYD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-482153404128Protein ETHYLENE INSENSITIVE 3
4zds_B4e-482153404128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G104000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430830.0BT043083.1 Zea mays full-length cDNA clone ZM_BFc0091K23 mRNA, complete cds.
GenBankJX4699690.0JX469969.1 Zea mays subsp. mays clone UT3232 EIL-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319601.10.0ETHYLENE INSENSITIVE 3-like 5 protein isoform X2
SwissprotQ9FJQ51e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A1B6PLA50.0A0A1B6PLA5_SORBI; Uncharacterized protein
STRINGSb06g018710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-92EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]