PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G118200.1.p
Common NameSb06g019930, SORBIDRAFT_06g019930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 241aa    MW: 26610.7 Da    PI: 4.8716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G118200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19261641128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLpk...kvkaeekew.yfFskrdkkya....tgkrknr.a 77 
                           lp+Gf F+P+   l+ ++L +++++     + e++  + vd+y v P+ Lp    +   + + w yfF+++   ++    +++   r +
  Sobic.006G118200.1.p  26 LPAGFVFQPKARSLLEDHLIARARDGAikDPYEDTiADGVDVYAVRPEALPFprrNRGLHGHVWaYFFATQPAGAEgsgaEDDDDVReV 114
                           799*********************9995533455526678**********953332223666887888887665543333333555657 PP

                   NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++ g W++ g dke   ++ge+   ++ ++f++   p+ +kt W m+e+rl
  Sobic.006G118200.1.p 115 AAGGCWRQYGGDKEYRGRDGEVYAFRRRFAFHQ-AGPRRKKTVWRMKEFRL 164
                           889*****************************5.667779*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-1720169IPR003441NAC domain
PROSITE profilePS5100522.74726191IPR003441NAC domain
PfamPF023651.6E-1027164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAQTPEGTTT APVQAPDRVP RPMLKLPAGF VFQPKARSLL EDHLIARARD GAIKDPYEDT  60
IADGVDVYAV RPEALPFPRR NRGLHGHVWA YFFATQPAGA EGSGAEDDDD VREVAAGGCW  120
RQYGGDKEYR GRDGEVYAFR RRFAFHQAGP RRKKTVWRMK EFRLKETAPR FRGVVFHPDA  180
KGLVIWKVSN QVIPEEEPAV DYYGNGGMND DEEEEDEDEE IGPVAITVGD AAAAAPDALA  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139153RRRFAFHQAGPRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G118200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826306.12e-77uncharacterized protein LOC112901581
TrEMBLA0A1Z5RDH81e-173A0A1Z5RDH8_SORBI; Uncharacterized protein
STRINGSb06g019930.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Representative plantOGRP1316635