PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G120301.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 299aa    MW: 32430.6 Da    PI: 5.6072
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G120301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.5e-109917069125
                   NAM  69 atgkrknra............tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmhe 125
                            tg+r+++               + +W++ g++k+v++++g  +g kk+Lv+y   k+   k+e  +Wvmh+
  Sobic.006G120301.1.p  99 DTGNRTRQRiiatgnicdtvaSGNNRWHKNGSSKPVFDENGVRKGWKKILVLYkapKKVGAKPEGENWVMHQ 170
                           55555544335555555554345678***************************43322333344589****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1556178IPR003441NAC domain
PfamPF023651.2E-667170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDTSWIMNGL GFAEKIRTAT QSFTLRFGEL FAKPHIKCTN CDCNVDLSND GSQLRLTDMF  60
LSWTALPAGV KFDPTDLEIL HHLQGKSSLP NSVVLNAYDT GNRTRQRIIA TGNICDTVAS  120
GNNRWHKNGS SKPVFDENGV RKGWKKILVL YKAPKKVGAK PEGENWVMHQ TPMTDPPQLR  180
RLHSSTSNTE QYTPIQEYQC GTSKMKVEAA ECSSCFAELS PAIPTSDEPI CSPTDALDTG  240
LDASLPVDGP SMDLFDGLPD LDNTLPFTGT PSGGSISLHE IFGQQDSLGG LAGRLPLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G120301.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560891e-66BT056089.1 Zea mays full-length cDNA clone ZM_BFb0005H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663317.11e-121SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLA0A1Z5REC00.0A0A1Z5REC0_SORBI; Uncharacterized protein
STRINGGRMZM2G111770_P011e-119(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-27NAC domain containing protein 44