PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G127900.1.p
Common NameSb06g020810, SORBIDRAFT_06g020810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 203aa    MW: 22435.2 Da    PI: 9.2267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G127900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12132177655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Sobic.006G127900.1.p 132 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 177
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-15129185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-12130181No hitNo description
Gene3DG3DSA:4.10.280.108.0E-13131186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSGYQKKMKS PMNLSRQGAL SQFSEDGIPN DLTNNVHGIG HSEENITANN VARSFSTGFS  60
IGSWEDPNSI VFSNPTSKAG IHNNDDIIAS ISNSYELQFG VAKETAGLLQ MQQDQVPFRV  120
RAKRGCATHP RSIAERERRT RISEKLRKLQ ALVPNMDKQT STADMLDLAV DHIRGLQSEL  180
QVYALKEDKE KCTCRGNRPS GR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G127900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317936.11e-149transcription factor bHLH129 isoform X1
TrEMBLA0A1B6PLQ41e-150A0A1B6PLQ4_SORBI; Uncharacterized protein
STRINGSb06g020810.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-40bHLH family protein