PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G127900.2.p
Common NameSb06g020810, SORBIDRAFT_06g020810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 201aa    MW: 22172.9 Da    PI: 9.2738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G127900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12132177655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Sobic.006G127900.2.p 132 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 177
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-16129192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-12130181No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14131190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSGYQKKMKS PMNLSRQGAL SQFSEDGIPN DLTNNVHGIG HSEENITANN VARSFSTGFS  60
IGSWEDPNSI VFSNPTSKAG IHNNDDIIAS ISNSYELQFG VAKETAGLLQ MQQDQVPFRV  120
RAKRGCATHP RSIAERERRT RISEKLRKLQ ALVPNMDKQT STADMLDLAV DHIRGLQSEL  180
QALKEDKEKC TCRGNRPSGR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G127900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680391e-78AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448088.21e-147transcription factor bHLH129 isoform X2
TrEMBLA0A1B6PLQ51e-148A0A1B6PLQ5_SORBI; Uncharacterized protein
STRINGSb06g020810.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-42bHLH family protein