PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G131800.1.p
Common NameSb06g021170, SORBIDRAFT_06g021170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 269aa    MW: 28301.9 Da    PI: 4.6991
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G131800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07446541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Sobic.006G131800.1.p  4 QCDACEAAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                          6******99*********************6678888888877 PP
2zf-B_box28.72.8e-095991234
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                          + ++C+ ++ek++ +fC +++ l+C+dC + +H
  Sobic.006G131800.1.p 59 SLPRCDVCQEKPAFIFCVEDRALFCRDCDEPIH 91
                          5789**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
PfamPF006433.2E-5447IPR000315B-box-type zinc finger
SMARTSM003364.6E-9447IPR000315B-box-type zinc finger
SMARTSM003363.9E-1458105IPR000315B-box-type zinc finger
PROSITE profilePS501198.77458105IPR000315B-box-type zinc finger
PfamPF006434.2E-760101IPR000315B-box-type zinc finger
CDDcd000212.09E-86191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRIQCDACEA AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLALG DATAASASSL  60
PRCDVCQEKP AFIFCVEDRA LFCRDCDEPI HVPGTLSGNH QRYLATGIRV GFSSVCGAGA  120
GAEGLPPPAP PKGSSKPAAV VSAPAAGATK TTTTVKDTLP QEVPSSPFLP PSGWAVEDLL  180
QLSDYESSDK KDSPLGFKEL EWFADIDLFH AHSPAKTTTA EVPELFASPQ PASNAGFYKT  240
NGVARQSKKP RMEVPEDDED YFIVPDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.150570.0callus| leaf| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G131800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634380.0EU963438.1 Zea mays clone 262479 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448103.10.0B-box zinc finger protein 24
TrEMBLC5YBE40.0C5YBE4_SORBI; Uncharacterized protein
STRINGSb06g021170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Representative plantOGRP53971020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-52DBB family protein