PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G141900.1.p

Common Name

Sb06g022080, SORBIDRAFT_06g022080

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 391aa MW: 42785.5 Da PI: 7.1269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G141900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.9	4.5e-11	60	178	8	126
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +Pt ++lv +yL+++ + + el i+++d+y ++P L + + ++++ ew+fF++r + +r++ +g + g++++ Sobic.006G141900.1.p 60 DPTPDDLVGRYLRARRALRCGELPPQIHDADVYGAHPAFLANvhppANGGGDRlEWFFFVCRGRGL----GGKRKAGRGAYRLVGETND 144 7**********9988888777667**********74456533334556***99855....5677778899**888 PP NAM 92 vlskkgelvglkktLvfy..kgrapkgektdWvmhey 126 + +++ ++ ++a+ +++t+W m+ey Sobic.006G141900.1.p 145 SRG---GGAWYCHSFRYHedAAEASASKETEWRMDEY 178 755...5578899*4334777889******9 PP
2	NAM	30.9	7.9e-10	237	361	14	127
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgk........rknratksgyWkatgkdkev 92 lv+ yL+ + g++l++ ++ + +d++ ++P L +a+++ ew+f ++r +++++g r++ra y a + v Sobic.006G141900.1.p 237 LVQLYLASRSVGDPLRC-RMHHATDVCAAHPAVLTgVLPAANDRfEWFFAARRPRTTEHGGgddgiiaaRPRRAGPGQYVPAARHYWGV 324 8999********999.777888******9433334555699998888888886666778888799998776666677778888 PP NAM 93 lskkgelvglkktLvfy..kgrapkgektdWvmheyr 127 + +g++vg ++++ + ++ a++ ++t+W m+ey Sobic.006G141900.1.p 325 RDGEGRDVGYRRVFLYRedDEAARRLSRTEWWMEEYG 361 88899*******94334677889*******5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.128	53	206	IPR003441	NAC domain
SuperFamily	SSF101941	1.06E-19	60	204	IPR003441	NAC domain
Pfam	PF02365	4.2E-7	60	178	IPR003441	NAC domain
PROSITE profile	PS51005	17.49	224	386	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-20	235	385	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
KPAPGATDPA PVTSFSLREE ETDDGWVLLG GGGGGGRPPR PPPRRGTSRP SAGGERPPLD 60 PTPDDLVGRY LRARRALRCG ELPPQIHDAD VYGAHPAFLA NVHPPANGGG DRLEWFFFVC 120 RGRGLGGKRK AGRGAYRLVG ETNDSRGGGA WYCHSFRYHE DAAEASASKE TEWRMDEYGD 180 RDDDDDSSGA GAGAAFDMVV CKVYPARGGA LHERLVQQHS TSTSTTPAAG VKKPQVLVQL 240 YLASRSVGDP LRCRMHHATD VCAAHPAVLT GVLPAANDRF EWFFAARRPR TTEHGGGDDG 300 IIAARPRRAG PGQYVPAARH YWGVRDGEGR DVGYRRVFLY REDDEAARRL SRTEWWMEEY 360 GFGPDFPFDD ENGNDEELVV CKVYLRMARR *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

KPAPGATDPA PVTSFSLREE ETDDGWVLLG GGGGGGRPPR PPPRRGTSRP SAGGERPPLD  60
PTPDDLVGRY LRARRALRCG ELPPQIHDAD VYGAHPAFLA NVHPPANGGG DRLEWFFFVC  120
RGRGLGGKRK AGRGAYRLVG ETNDSRGGGA WYCHSFRYHE DAAEASASKE TEWRMDEYGD  180
RDDDDDSSGA GAGAAFDMVV CKVYPARGGA LHERLVQQHS TSTSTTPAAG VKKPQVLVQL  240
YLASRSVGDP LRCRMHHATD VCAAHPAVLT GVLPAANDRF EWFFAARRPR TTEHGGGDDG  300
IIAARPRRAG PGQYVPAARH YWGVRDGEGR DVGYRRVFLY REDDEAARRL SRTEWWMEEY  360
GFGPDFPFDD ENGNDEELVV CKVYLRMARR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G141900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825360.1	1e-153	uncharacterized protein LOC112900773
TrEMBL	A0A1Z5RDU0	0.0	A0A1Z5RDU0_SORBI; Uncharacterized protein (Fragment)
STRING	Sb06g022080.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14767	18	19
Representative plant	OGRP14816	4	4

Link Out ? help Back to Top
Phytozome	Sobic.006G141900.1.p
Entrez Gene	8075912