PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G147400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 291aa    MW: 31914.6 Da    PI: 6.5106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G147400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.1e-42101241128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF P+deelv++yL kkv              d++  ePw+Lp ++k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd
  Sobic.006G147400.1.p  10 LPPGFRFYPSDEELVCHYLYKKV--------------DLHAREPWELPDAAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKD 84 
                           79*****************9876..............566679*****87788899********************************* PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +ev s  ++ +vg++ktLvfy+grap+g+k+ Wvmhe+rl
  Sobic.006G147400.1.p  85 REVRSPaTRGVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 124
                           ****9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.6781143IPR003441NAC domain
SuperFamilySSF1019415.89E-558143IPR003441NAC domain
PfamPF023652.8E-2711124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVDLHAREPW ELPDAAKLTA SEWYFFSFRD  60
RKYATGSRTN RATKTGYWKA TGKDREVRSP ATRGVVGMRK TLVFYQGRAP NGVKSCWVMH  120
EFRLDSPHTP PKEDWVLCRV FQKRKDSEQD NGGGSSSPTT FAGASQSQGV LPEPDQPTSM  180
MDASYVVDQP GSTAGIFAAP PHHHQENLMS LGIGGLDALL MNGAMWQYTS SSVFDHFPQQ  240
EVTSSPTMMG LGSSRGGGGD GGCSSSFFYD SGFEDMANIG GMGFPQGWTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4611494171NO APICAL MERISTEM PROTEIN
1ut4_B6e-4611494171NO APICAL MERISTEM PROTEIN
1ut7_A6e-4611494171NO APICAL MERISTEM PROTEIN
1ut7_B6e-4611494171NO APICAL MERISTEM PROTEIN
4dul_A6e-4611494171NAC domain-containing protein 19
4dul_B6e-4611494171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.108340.0ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G147400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664310.0EU966431.1 Zea mays clone 294479 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454729.10.0protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A1B6PM150.0A0A1B6PM15_SORBI; Uncharacterized protein
STRINGSb04g036340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-79NAC domain containing protein 74