PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G154000.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

TCP

Protein Properties

Length: 208aa MW: 21339.2 Da PI: 10.3162

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G154000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.7	1.8e-33	51	146	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg........ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl qa+p+i ++tg+++++a +c+++ s s+++ + Sobic.006G154000.1.p 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLHQAEPSILAATGSGTTPAvFSCSSAPSTSAGAG---Asltllgkr 136 8********************************************************99999444533333333222...122344433 PP TCP 89 .........k 89 + Sobic.006G154000.1.p 137 preehepapA 146 3333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.368	50	104	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-30	51	147	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MASRDGAATF QVYRPMPAPS PAPPPMSLSA AAADAAAPAP KKAKSPGGAC KDRHSKVNGR 60 GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLHQAEPS ILAATGSGTT PAVFSCSSAP 120 STSAGAGASL TLLGKRPREE HEPAPAPAPF WVTPTLQARP VAASWGLSPA QEAAAQAYAS 180 VAAQGHHHLN LLSVLSGATR PSEEESR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G154000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	1e-148	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446818.2	1e-146	transcription factor TCP7
Swissprot	Q9FMX2	1e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	C5YCH7	1e-144	C5YCH7_SORBI; Uncharacterized protein
STRING	Sb06g023130.1	1e-133	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G154000.1.p