PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G163900.1.p
Common NameSb06g024000, SORBIDRAFT_06g024000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30249.6 Da    PI: 5.1029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G163900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1966119456
                           -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Sobic.006G163900.1.p  66 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 119
                           458**************9899********************************9 PP
2HD-ZIP_I/II123.11.4e-3964157193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                           e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L++++d l+++ e+L++++ +L+
  Sobic.006G163900.1.p  64 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAVLRAKFDDLHARVESLKQDKLALT 152
                           69******************999****************************************************************** PP

           HD-ZIP_I/II  89 eelke 93 
                           ++l+e
  Sobic.006G163900.1.p 153 TQLNE 157
                           99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-1940123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-2043122IPR009057Homeodomain-like
PROSITE profilePS5007117.79960121IPR001356Homeobox domain
SMARTSM003898.6E-2063125IPR001356Homeobox domain
CDDcd000861.42E-1765122No hitNo description
PfamPF000464.1E-1766119IPR001356Homeobox domain
PRINTSPR000316.9E-792101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000316.9E-7101117IPR000047Helix-turn-helix motif
SuperFamilySSF902571.39E-5120201No hitNo description
PfamPF021831.4E-13121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDRPDHHQHQ FFMPAPAPAT VQVPQPQQQQ QQQICVPMMD EPSSFLAGMG GGGGGPSSSS  60
ARGERKRRFT EEQIRSLESM FHAHHAKLEP REKAELAREL GLQPRQVAIW FQNKRARWRS  120
KQLEHDYAVL RAKFDDLHAR VESLKQDKLA LTTQLNELSE RLREREDRAA GGATTASSSS  180
CNVGGAEAEA EAEDDKRNVV LGCVNNMEPP EPESCVLVGP CATPADVSVE SECDDHHHHH  240
LDYDDGFPES YCAMPELWEP WPLVEWNAVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.22050.0pollen
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G163900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282500.0KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446870.10.0homeobox-leucine zipper protein HOX22
SwissprotQ01IK02e-89HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-89HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLC5YD140.0C5YD14_SORBI; Uncharacterized protein
STRINGSb06g024000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1482144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-33homeobox 7