PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G165100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 208aa    MW: 22720.9 Da    PI: 11.707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G165100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix285.6e-092181165
              trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                          +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  +
  Sobic.006G165100.2.p 21 CWTTDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSNR 81
                          8*********************************99865....689*************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-72082No hitNo description
Gene3DG3DSA:1.10.10.604.8E-42275IPR009057Homeodomain-like
PROSITE profilePS500906.262274IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASPSPPSPA RASGRRVPPP CWTTDETLAL ARAYTARRLA VGREHLTSAD WAAVAAAAPS  60
KTARQCRHKV EKLRRRLRSN RRRPCPLLDA IDLLDGPSPP FFSKSRSRST SLSSSPPPPA  120
VSPPSPPSPP ASPPRKRRRD DAGDEEGVSD VVGALRAIGE GFLRAEERRM EAARETQRMR  180
MEMALRHLDA QRRLMDALVG RIVDALD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177KLRRRLR
27278LRRRLRS
3134138RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.198110.0pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G165100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660460.0BT066046.2 Zea mays full-length cDNA clone ZM_BFb0189B18 mRNA, complete cds.
GenBankDQ2454670.0DQ245467.1 Zea mays clone 15810 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446875.21e-142actin cytoskeleton-regulatory complex protein pan1
TrEMBLA0A1Z5RE871e-140A0A1Z5RE87_SORBI; Uncharacterized protein
STRINGGRMZM2G320827_P012e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024
Representative plantOGRP1317245