PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G167900.1.p
Common NameSb06g024360, SORBIDRAFT_06g024360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 324aa    MW: 34269.6 Da    PI: 5.8047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G167900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20140191256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Sobic.006G167900.1.p 140 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 191
                           8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32139199IPR001471AP2/ERF domain
SMARTSM003804.9E-37140204IPR001471AP2/ERF domain
PfamPF008472.2E-14140190IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23140199IPR016177DNA-binding domain
CDDcd000181.74E-29140199No hitNo description
PROSITE profilePS5103224.105140198IPR001471AP2/ERF domain
PRINTSPR003671.6E-13141152IPR001471AP2/ERF domain
PRINTSPR003671.6E-13180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNMDFTGDAD GFALDFIGDL MFGVDGGSVP VASPVVVSDD LTFPVLLPPH QPEFQPVSFL  60
PQQQQHQGYI DVGAAPTAAS VVGEAPAAFR AQEPARPVMI KFGSEPSSPV ATTMRQPLTI  120
SVPPSSYAWA AAPAVEDFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT YDTPVEAARA  180
YDRAAFRMRG AKAILNFPNE VGTRGADDLW AAPPAPPATA NKRKRQQMVE GEDPDVEVAA  240
VVGKAVKMEA PSSSSLTQAS SASPSSTVTS STTTGKGGGA EWLPVTPSSG SSEQYWEALL  300
RGLPPLSPLS PHPALGFPLL SVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-261402001474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G167900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446883.10.0ethylene-responsive transcription factor 6
TrEMBLC5YDE70.0C5YDE7_SORBI; Uncharacterized protein
STRINGSb06g024360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-32ethylene responsive element binding factor 5