PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G174725.1.p
Common NameSB20O07.13
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 585aa    MW: 62628.5 Da    PI: 7.5685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G174725.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.22.2e-25331762126
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWk.a 85 
                           p GfrF+Pt eelv +yL +++ g+++  +e++ e+d y ++P+ L +k+k+   ++ wyf s+r +ky+ g+r+ r t+  +g+Wk +
  Sobic.006G174725.1.p  33 PIGFRFEPTTEELVEFYLLPRLLGEPTVPNEFVIEADAYGCDPEILTEKYKEsgVDDTWYFLSPRYRKYRGGDRPVRRTAddRGRWKpS 121
                           89************************88879999************965544224559*****************99665569****88 PP

                   NAM  86 tgkdkevlsk..............kgelvglkktLvfykgrapkgektdWvmhey 126
                           tg++k+  ++              k+++    +tL++y g++++ +kt+W+mhe 
  Sobic.006G174725.1.p 122 TGQSKPPEDEddddastsrhskakKKQAAFSENTLAYYVGSTKDETKTKWLMHEL 176
                           999999998878877777776665555599999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.84832214IPR003441NAC domain
SuperFamilySSF1019411.18E-3132214IPR003441NAC domain
PfamPF023651.8E-1533176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAEGEERPSG GGDDENGEER PSGGGDDENG KYPIGFRFEP TTEELVEFYL LPRLLGEPTV  60
PNEFVIEADA YGCDPEILTE KYKESGVDDT WYFLSPRYRK YRGGDRPVRR TADDRGRWKP  120
STGQSKPPED EDDDDASTSR HSKAKKKQAA FSENTLAYYV GSTKDETKTK WLMHELVVPV  180
TPDNGFHSKS KSAAAEPRND MLLNRYVVCR IYKSPLRKWK EIDEAAAAAE VPTSSHSSWP  240
APECVIGEAA ARATSSRQQP PAKRPAVGRP AAASGHTGAP NKGVSVSQST LFPGGCSAPP  300
TRGNGRGSSV RMPPIVVGAG AAGHHGPGLP ALMHLLRPPV QVQQTPLVYG YGNRAAGMPN  360
VNGQAAPRWQ GPPPHRAAAT TPNSLGPEMM TRPPNLAAGQ PAWLPSPRRQ QQQQQQQQQQ  420
QQQPPPETEE AYRNRVYARL IAEMKLQKKA EQDSAARAGQ QQISQTASAS AKPACFHDEG  480
GDRPAGVEAM VRPAQFPAPH GGYPYGSSSS SNNLAQRPQR QQSTSSAALA PALAAVEKAP  540
AAENVPSNQP VPPAPGANEG SCKGDAPTAT IADNIILQIL TTDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-143321216166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G174725.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423110.0AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823986.11e-111NAC domain-containing protein 22-like
TrEMBLA0A1Z5REE40.0A0A1Z5REE4_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1936857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-19NAC domain containing protein 102
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]
  3. Swigonov
    Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.
    Genetics, 2005. 169(2): p. 891-906
    [PMID:15489523]