PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G179600.1.p
Common NameSb06g025420, SORBIDRAFT_06g025420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 338aa    MW: 38355 Da    PI: 9.583
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G179600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.6e-26200249352
                RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           ++i+l d+++yF+lp++dA+k+L++++++LKr+CRqyGI+RWPhRkiksl
  Sobic.006G179600.1.p 200 DSITLVDIAQYFHLPLRDASKTLKIGVSILKRKCRQYGIARWPHRKIKSL 249
                           689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.384184269IPR003035RWP-RK domain
PfamPF020421.3E-21201249IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDTAVSTLTA LAIFASTVEH AAYRSVHGYR VVGRKRGGWV RWERWVERQF VLSLSFPPCL  60
EVALPAAAPR ILPAGWRTRP VFREGQTVED TWRCIVAFDS VAAVAPSSPP PPVLSPLVNP  120
QLQYLPNLYN DLLKVFQFQE EKKVSQLVNS KKQPIRSGEQ GKTSDLADAS ESDSEGDSQS  180
DKELAPPVQK HIRANRKHID SITLVDIAQY FHLPLRDASK TLKIGVSILK RKCRQYGIAR  240
WPHRKIKSLD SLIHDLEYVL AREDDEEEEK QLQKERLAAA ITALAKRKSM LESEKETIQQ  300
KPTMDLMAET KLFREDVFKR RYRAKSSVMD DMDFGMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G179600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587690.0HQ858769.1 Zea mays clone UT1753 NLP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448339.10.0protein RKD5
TrEMBLC5YE030.0C5YE03_SORBI; Uncharacterized protein
STRINGSb06g025420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-33RWP-RK domain-containing protein