PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G182300.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Dof
Protein Properties Length: 376aa    MW: 37607.5 Da    PI: 8.2208
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G182300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-3976137263
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                           kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Sobic.006G182300.3.p  76 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 137
                           57899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2976134IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3378134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05980134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVMCSRSSSS SSTETHNPTR AQAAKGLGLV KPMEEMLMAA NAGAANPSQG SNNPNPPAPA  60
PGGALRGGGA PAAPLKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL  120
RNVPVGGGSR KNKRSSSSAS ASASTSASVT SSSMASAEGA AASKNPKLAH EGAHDLNLAF  180
PHHGGLHAPE FAAFPSLESS NVCNPGGGMT SNGRGGGAGP AVGALSAMEL LRSSGCYMPL  240
QMPMQMQGDY TAAEFALGDF RTPPPPPSQS VLGFSLDAHG PGSGAAAAGY GSSAGLQGVT  300
ENAGRLLFPF EDLKPPVSSG GGGVAGGATG GAGDGNSNHN QFDHNKEQDG GGGPGAGHDT  360
PGFWSGMIGG SGASW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.202873e-75callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G182300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824130.0KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448355.21e-180dof zinc finger protein DOF4.6 isoform X1
SwissprotQ9SXG81e-117DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A1Z5REM00.0A0A1Z5REM0_SORBI; Uncharacterized protein
STRINGSb06g025680.11e-161(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.16e-39Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]