PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G184700.1.p
Common NameSb06g025890, SORBIDRAFT_06g025890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 217aa    MW: 22810.1 Da    PI: 7.0929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G184700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-171766256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g+
  Sobic.006G184700.1.p 17 FYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRGA 66
                          69***6..678*********843...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-291779IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-181774IPR016177DNA-binding domain
PROSITE profilePS5103220.351773IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-281874IPR001471AP2/ERF domain
PfamPF008474.7E-91865IPR001471AP2/ERF domain
CDDcd000186.74E-251875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSDRGGPASP RSGKHPFYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
RALRGADAAL NFPHLAASRP APASTSADDI RAAAAEAAAS LLLQQEQQQQ PADHHQPPAR  120
GGAPGRGIAP AEAGAAQQQT GGSSAAAWAQ QEGGSGAGNP YFLDEEALFE TPQYLRNMAA  180
GMMMSPPRFG RNSSDDSPDH PSSSDAGDSL WSYRDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1414741173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G184700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-148EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318413.11e-153ethylene-responsive transcription factor ERF027
TrEMBLC5YE471e-152C5YE47_SORBI; Uncharacterized protein
STRINGSb06g025890.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-15ERF family protein