PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G184800.1.p
Common NameSb06g025900, SORBIDRAFT_06g025900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 228aa    MW: 24586.4 Da    PI: 5.6286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G184800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1756106155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + ykGVr +   grWv+e+r+p   g r+r++lg+f tae+Aa+a++ a+++l+g
  Sobic.006G184800.1.p  56 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 106
                           68****9666.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1256106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3057116IPR001471AP2/ERF domain
PROSITE profilePS5103221.48357114IPR001471AP2/ERF domain
SMARTSM003801.6E-2757120IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2057115IPR016177DNA-binding domain
CDDcd000183.48E-1958116No hitNo description
PRINTSPR003675.9E-85869IPR001471AP2/ERF domain
PRINTSPR003675.9E-88096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDWAYYGISG YSTTPSPPPV GVGGGVGDED EAYMTVSSAP PKRRAGRTKF KETRHPVYKG  60
VRSRNPGRWV CEVREPHGRQ RIWLGTFETA EMAARAHDVA ALALRGRAAC LNFADSPRRL  120
RVPAQGAGHD EIRRAAVEAA ELFRPPQQQQ HNVGGSEAAA AAVAAPCAQG SGGGGIGGDF  180
AYYPMDDGLE FEMHGYLDMA QGMLVDPPQA TAWIEDEYEC EVSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13551131271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G184800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560440.0EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446960.11e-167dehydration-responsive element-binding protein 1E
SwissprotA2XWL67e-99DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2737e-99DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLC5YE481e-166C5YE48_SORBI; Uncharacterized protein
STRINGSb06g025900.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-40C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]