PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G190400.1.p
Common NameSb06g026370, SORBIDRAFT_06g026370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 421aa    MW: 44746.9 Da    PI: 6.329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G190400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.61.4e-29100191187
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  Sobic.006G190400.1.p 100 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 188
                           89***************************955556888************************************************854 PP

                           .SS CS
                    B3  86 .gr 87 
                            g+
  Sobic.006G190400.1.p 189 aGE 191
                           344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4190210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-2897188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-2598185No hitNo description
PfamPF023629.8E-27100203IPR003340B3 DNA binding domain
SMARTSM010191.4E-20100205IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775100205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEFASSSSRF SKEEDEEEEG EEEDEEASPR EIPFMTAAAA TADTGPAAAS SSSPSAAGAS  60
ASASGSAAAL RSGDGAGASG SGGGGGGSDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ  120
HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  180
DTVSFCRGAG EAARDRLFID WKRRADSRDP HRMPRLPLPM APVASPYGLG PWGGGAGGFF  240
MPPAPPATLY EHHRFRQALD FRNINAAAAP ARQLLFFGSQ GMPPRASMPL QQQQPQPQPS  300
LPPPPPPLHS IMMVQPGSPA VTHGLPMVLD SVPLVNSPTA AAKRVRLFGV NLDNPQQGSS  360
AESSQDANAL SLRMPGWQRP GPLRFFESPQ RGAAESSAAS SPSSSSSSKR EAHSSLDLDL  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-61952043113B3 domain-containing transcription factor NGA1
5os9_B2e-61952043113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G190400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448384.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-133Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLC5YEI60.0C5YEI6_SORBI; Uncharacterized protein
STRINGSb06g026370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]