PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G190800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 166aa    MW: 18327.2 Da    PI: 10.3653
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G190800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62e-1672128561
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+    ++ +++ k+
  Sobic.006G190800.1.p  72 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEELQKKHVYTNNAIDNYKQ 128
                           79****************************************998777777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1668132IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2270115IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-1372130No hitNo description
PfamPF001702.7E-1472128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-1772132No hitNo description
CDDcd147073.11E-2372117No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAMGNGLMPG VPGMAGGAVT VVSPVDTSVA QLDSMGKGNG DLSSPMAPVP YPFEGVIRGR  60
RSGACVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA EVQKLKEQNE ELQKKHVYTN  120
NAIDNYKQLV LANYQRQILN LSLFLVPSLS MTMRKITTVN ESERL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214272e-34shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G190800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396521e-142BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds.
GenBankEU9647681e-142EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds.
GenBankKJ7269431e-142KJ726943.1 Zea mays clone pUT3489 bZIP transcription factor (bZIP68) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319491.12e-78bZIP transcription factor TRAB1
SwissprotQ6ZDF33e-53TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLA0A1B6PMT31e-117A0A1B6PMT3_SORBI; Uncharacterized protein
STRINGSb06g026410.18e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Representative plantOGRP39841024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-28abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]