PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G210300.1.p
Common NameSb06g028090, SORBIDRAFT_06g028090
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 232aa    MW: 23785.3 Da    PI: 9.3608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G210300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-192070155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  Sobic.006G210300.1.p 20 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 70
                          689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-192079No hitNo description
PfamPF008472.2E-132070IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-222179IPR016177DNA-binding domain
PROSITE profilePS5103224.542178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-312178IPR001471AP2/ERF domain
SMARTSM003801.0E-352184IPR001471AP2/ERF domain
PRINTSPR003671.6E-102233IPR001471AP2/ERF domain
PRINTSPR003671.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPKNALPAA SAVTDGMMEP RFRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTAEAAARA  60
YDAAALHFRG PKAKTNFPVA FAAAAHAQAL ALPLPLPPPP KKLAVSPSSS TVESSSRDSP  120
ATPPRARSPS PAPTVMPAPS LDLCLGMPAM VAAQPFLFLD PRLAVTVAVP APVACRPTAV  180
AAGAKKQTAP TSCGGDEEQS DTGSSSSVVD ASPEAVCVGF DLNMPPPAEV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201681975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.62040.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G210300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562641e-115EU956264.1 Zea mays clone 1559829 ethylene-responsive transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447072.11e-161ethylene-responsive transcription factor 4
TrEMBLC5YFM41e-159C5YFM4_SORBI; Uncharacterized protein
STRINGSb06g028090.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-21erf domain protein 9