PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G215050.1.p

Common Name

Sb06g028520, SORBIDRAFT_06g028520

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 952aa MW: 107390 Da PI: 7.6466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G215050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.7e-24	195	278	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +YA ++GFsvrk +k+ +n +r +vCs+eg+r+++++k r+r+etr+gC a++ +k + +gk++vt+++++HnH+l Sobic.006G215050.1.p 195 EYYVSYAGNMGFSVRKGWWEKTAKNS-NRTRVYVCSREGFRSKKDTK-----RPRSETRVGCPARVAIKVTPSGKYRVTEFVKDHNHQL 277 69***************9996666.78999******99887.....9*********************************9 PP FAR1 90 a 90 a Sobic.006G215050.1.p 278 A 278 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-21	195	278	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-24	375	468	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	642	689	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	664	686	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-5	664	691	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MAAPSTSGDP AAAAGSEPVP TPSLGPAQRR HPASRISHIV RTYLDLSSSR KRRSAPKNQP 60 KAGDKETDAA DDETEGSKAG PSSSHPSRLL RELGIRVSRY THEERRDIIL RYMQKRSGRQ 120 VVNRAASKVP SRQALAVRRR RGAGGKFLGK DDAQTADKPE EKAEEEPELP PEVISNAGGV 180 PIVGMVFESE EKAYEYYVSY AGNMGFSVRK GWWEKTAKNS NRTRVYVCSR EGFRSKKDTK 240 RPRSETRVGC PARVAIKVTP SGKYRVTEFV KDHNHQLAAP FDIEMLKSQR VLTKVRPGSQ 300 NASNIPPGYK NYLRSKSTRD MKSGDLRTLM DYFRRMKSDN PSFYYAIQVD ENDKAANVFW 360 ADARSIMDYR YFCDVVCLDM IYKANDCSRP LALFLGMNHH QQMIIFGAAF LYDESVESFK 420 WLLDTFKNAM CGKHPKTILT DGSSALKEAL GLTWPGTIHR SCVWQIYQST VKSLAHMFSA 480 SEEFTYDFRH CVFNIEDEQE FIDTWNMIME KYNLGENEWF IKLYEDRENW AMPYNRQIFS 540 GEIKSLLQAE NVGTKLKQYL GYDTDLSLFL NFFESSAEKR RQEEIQADYQ ANQGVPRTPL 600 PLLWQAVNLY TPTIFELFRK ECELSMDCMA YGCGEFGSLS EYMITIKNKT KDQLVRFDSS 660 DASVACTCKK FESSGLLCCH ILKVYELRNV KEIPPQYFLK RWRKDAKLVT VDETDGFNFD 720 NDTKSSIPGR YAALCSLFYK IAAKAAENEE TFALMASQSD NLLVEIEGTL LSTLSDKSSG 780 HSLTDQLTHM TQNDYLLSSG LEGIGSTGKK CEVARRRNDL ETTKRKKARK GQPDATDSGP 840 RGELNIAPGS FQSEPSNDSN QFIPDQLMQG HYVLGHNFGL GSSQNLHDNL NQFGQASSSS 900 TLQEQPFTGN GQLTQGYPGD MHALQFMETT PQIDHQNGDE GQSSIPVWDF L*

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MAAPSTSGDP AAAAGSEPVP TPSLGPAQRR HPASRISHIV RTYLDLSSSR KRRSAPKNQP  60
KAGDKETDAA DDETEGSKAG PSSSHPSRLL RELGIRVSRY THEERRDIIL RYMQKRSGRQ  120
VVNRAASKVP SRQALAVRRR RGAGGKFLGK DDAQTADKPE EKAEEEPELP PEVISNAGGV  180
PIVGMVFESE EKAYEYYVSY AGNMGFSVRK GWWEKTAKNS NRTRVYVCSR EGFRSKKDTK  240
RPRSETRVGC PARVAIKVTP SGKYRVTEFV KDHNHQLAAP FDIEMLKSQR VLTKVRPGSQ  300
NASNIPPGYK NYLRSKSTRD MKSGDLRTLM DYFRRMKSDN PSFYYAIQVD ENDKAANVFW  360
ADARSIMDYR YFCDVVCLDM IYKANDCSRP LALFLGMNHH QQMIIFGAAF LYDESVESFK  420
WLLDTFKNAM CGKHPKTILT DGSSALKEAL GLTWPGTIHR SCVWQIYQST VKSLAHMFSA  480
SEEFTYDFRH CVFNIEDEQE FIDTWNMIME KYNLGENEWF IKLYEDRENW AMPYNRQIFS  540
GEIKSLLQAE NVGTKLKQYL GYDTDLSLFL NFFESSAEKR RQEEIQADYQ ANQGVPRTPL  600
PLLWQAVNLY TPTIFELFRK ECELSMDCMA YGCGEFGSLS EYMITIKNKT KDQLVRFDSS  660
DASVACTCKK FESSGLLCCH ILKVYELRNV KEIPPQYFLK RWRKDAKLVT VDETDGFNFD  720
NDTKSSIPGR YAALCSLFYK IAAKAAENEE TFALMASQSD NLLVEIEGTL LSTLSDKSSG  780
HSLTDQLTHM TQNDYLLSSG LEGIGSTGKK CEVARRRNDL ETTKRKKARK GQPDATDSGP  840
RGELNIAPGS FQSEPSNDSN QFIPDQLMQG HYVLGHNFGL GSSQNLHDNL NQFGQASSSS  900
TLQEQPFTGN GQLTQGYPGD MHALQFMETT PQIDHQNGDE GQSSIPVWDF L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	SRKRRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G215050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448527.2	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A1Z5RFN7	0.0	A0A1Z5RFN7_SORBI; Uncharacterized protein
STRING	Sb06g028520.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP16242	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.006G215050.1.p
Entrez Gene	8065844