PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G217500.2.p

Common Name

Sb06g028730, SORBIDRAFT_06g028730

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 229aa MW: 25681.5 Da PI: 9.4244

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G217500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.5e-16	129	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f++ +++s+v++ +l lp f+++h k+ e++tl++ de+g + + + kk + l++GWkeF+ +++L +gD +vF+l+++++ Sobic.006G217500.2.p 129 FIQPMIQSHVTRGFWLGLPTYFCRKHLPKSDETITLVV-DEEGDESDTLYL-AKKA-G--LSTGWKEFAIEHKLHDGDCLVFQLIEQTK 212 8899********************444445556665.566666565552.3333.3..9*********************98777 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ Sobic.006G217500.2.p 213 F--KVYIIRA 220 7..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.85E-21	123	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.3E-20	124	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.37E-23	127	219	No hit	No description
PROSITE profile	PS50863	11.321	129	221	IPR003340	B3 DNA binding domain
SMART	SM01019	8.3E-17	129	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-14	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAEAVAVAVA VAYEAQRQRQ VEANKRKLDE LQLHRLSAAV REAAAAAKPS PAKKWKARVP 60 RDGAAAGVEP LRRSGRLADL PEKPVYYQVR VKKLLKYNAR VPLDAAERSY AISKAEELVQ 120 DLGSSFPIFI QPMIQSHVTR GFWLGLPTYF CRKHLPKSDE TITLVVDEEG DESDTLYLAK 180 KAGLSTGWKE FAIEHKLHDG DCLVFQLIEQ TKFKVYIIRA TSYFESEH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G217500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041782	1e-145	BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
GenBank	BT061745	1e-145	BT061745.2 Zea mays full-length cDNA clone ZM_BFb0179F08 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448540.1	1e-168	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	4e-87	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1Z5RF03	1e-166	A0A1Z5RF03_SORBI; Uncharacterized protein
STRING	Sb06g028730.1	1e-167	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-42	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G217500.2.p
Entrez Gene	8066792

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]