PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G217800.1.p
Common NameSb06g028750, SORBIDRAFT_06g028750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 189aa    MW: 21549.3 Da    PI: 9.9692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G217800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.4e-182369455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Sobic.006G217800.1.p 23 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 69
                          59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.5E-201676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-172273No hitNo description
SuperFamilySSF474592.22E-212295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-152469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEDGSAPRRS TPPTTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCT KTDKVSMLDE  60
AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ QYMHYITADP AQMPPLRPSG QQPRQFQITQ  120
ANPQQRQSNV ESDFLSQMQN LNPSEPPQNF LRPPKLQLYT SEQRGGLPST SQNTGWISGR  180
SSSYNFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G217800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524830.0EU952483.1 Zea mays clone 1281977 protein SPATULA mRNA, complete cds.
GenBankEU9542880.0EU954288.1 Zea mays clone 1461253 protein SPATULA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447108.11e-136transcription factor PIF1 isoform X1
TrEMBLC5YG391e-135C5YG39_SORBI; Uncharacterized protein
STRINGSb06g028750.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-27phytochrome interacting factor 3