PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G240500.1.p
Common NameSb06g030660, SORBIDRAFT_06g030660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 256aa    MW: 27583.6 Da    PI: 9.9345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G240500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-1674123255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr +k +g+WvAeIr+p +   r+r++lg++ ta  Aa+a++ a  +l+g
  Sobic.006G240500.1.p  74 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 123
                           69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3073132IPR001471AP2/ERF domain
CDDcd000183.30E-2174132No hitNo description
SuperFamilySSF541711.37E-2174133IPR016177DNA-binding domain
PROSITE profilePS5103222.73474131IPR001471AP2/ERF domain
PfamPF008478.3E-1074123IPR001471AP2/ERF domain
SMARTSM003802.5E-3674137IPR001471AP2/ERF domain
PRINTSPR003676.9E-127586IPR001471AP2/ERF domain
PRINTSPR003676.9E-12113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAAAAMAP LAAAAAAAVK MEAEQAAMAA AGAAGPQLGS  60
AHQHHQQQMQ PRRQYRGVRM RKWGKWVAEI REPHKRTRIW LGSYATAVAA ARAYDTAVFY  120
LRGRSARLNF PDEIPSLSLS EGERGDGETD PAADGGGAGT LSAASIRKKA IEVGSRVDAL  180
QTGMMVPPPH HRERQRHHHH HHHHHHLPQL RVHAHAEEEH HQQEQKPSPQ RPAWSGRVKN  240
PDLNRAPSPE SSDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1573136468ATERF1
3gcc_A5e-1573136468ATERF1
5wx9_A2e-14741331474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G240500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278780.0KJ727878.1 Zea mays clone pUT5971 AP2-EREBP transcription factor (EREB47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448639.20.0ethylene-responsive transcription factor ERF008
TrEMBLA0A1B6PNK71e-180A0A1B6PNK7_SORBI; Uncharacterized protein
STRINGSb06g030660.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-27DREB and EAR motif protein 3