PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G241000.1.p
Common NameSb06g030700, SORBIDRAFT_06g030700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 246aa    MW: 26992.7 Da    PI: 9.3729
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2093152357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           +R++++++q+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  Sobic.006G241000.1.p  93 TRWNPSPDQIRVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 152
                           8*****************99**************************************97 PP
2Wus_type_Homeobox114.36.1e-3792154365
     Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +tRW+P+p+Qi++Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
  Sobic.006G241000.1.p  92 TTRWNPSPDQIRVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 154
                           69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1387158IPR009057Homeodomain-like
PROSITE profilePS500719.96188153IPR001356Homeobox domain
SMARTSM003891.1E-790157IPR001356Homeobox domain
CDDcd000861.92E-593154No hitNo description
PfamPF000461.2E-1793152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-893152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRLHHLHVAY LDKAAAGSPP PSSPPSISLV ASQSSSAAIP LALQQYCLRP LAPKISFPEA  60
RKMVVLPEFA RVRNASSRLL NCTVQVPTAG GTTRWNPSPD QIRVLEMLYR GGMRTPNSFQ  120
IEQITEELGK YGRIEGKNVF YWFQNHKARE RQKQKRAALL TLSTTATSTL LPLSPAAAET  180
KDGVETKKEE ACEDASSRKR RCRTWDGDVV HGGGGDDAAK EVADDYYTDD VTLELFPLRP  240
QGKAS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G241000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851950.0BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds.
GenBankEU9642750.0EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448640.10.0WUSCHEL-related homeobox 4
SwissprotQ25AM21e-88WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-88WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A1Z5RFT40.0A0A1Z5RFT4_SORBI; Uncharacterized protein
STRINGSb06g030700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.16e-39WUSCHEL related homeobox 4