PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G245900.1.p
Common NameSb06g031160, SORBIDRAFT_06g031160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 818aa    MW: 93267.1 Da    PI: 6.4696
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G245900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.1e-2081167190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                           +fY +Y+ ++GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++   +tgCkak+ vk  + +++wev+ leleHnH+
  Sobic.006G245900.1.p  81 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGMKTGCKAKMIVKDAHfQNRWEVIVLELEHNHP 165
                           6****************99988..9999**************99877..7777778899*************9**************** PP

                  FAR1  89 la 90 
                           l 
  Sobic.006G245900.1.p 166 LD 167
                           97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1781168IPR004330FAR1 DNA binding domain
PfamPF105512.5E-18290378IPR018289MULE transposase domain
PROSITE profilePS509669.174569605IPR007527Zinc finger, SWIM-type
PfamPF044348.6E-6569601IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-4580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MRSIYFFSCT SLNTTYISTR GSSDLQTLEP MEEEEYSSET SNEEDGEKEG NSAEVFRPVD  60
VDPACLPKVG MIFDSEEDAF QFYVTYGCHA GFGITRRSNN TFDGFRYRST FICSKGGQSR  120
LRSGVTRPAR KRGMKTGCKA KMIVKDAHFQ NRWEVIVLEL EHNHPLDPSL LKFKRHLKNS  180
PFLINPPQIC ESEGQQSNSA LVHSSRVGDT GVTSSSTQIE FKAKIDRNRK LKLAEGDLDA  240
LLDFLNKMQD QNPCFFYSLD MNEQGQLRNV FWADAKSRSS YNYFGDVVAI NVTNFSDQYD  300
MQFVSFMGTN HHAQPVLLGC GLLAGRSLGA YVWLFGTWLR CMNAKPPHSI ITNYCHDVAI  360
AIKKVFPNAR HRFCLANILN VLPEKLEEME NKDEIISTFT TLAYDYVTVP DFDREWQDTI  420
QHFRLEGNEW LSKLYEVRVQ WAPVYVKDSF WAGMSVTDRS DSVTDYFDGW LMSGTSLKMF  480
VEQYEEAVKG KLEKESYEDL RSAQMRPPMV TGLPVEDQAA KVYTAEIFQK FFNEIGHSFH  540
CNYSILERND SMVTYIVSEH VDQTNKVDYK VAYDNVQGDI WCLCRLYQSK GILCRHALTV  600
LRQELVPMIP QKYIIHRWCK DCKQTCASIS QPVSAEVVEF GSMNSESKEY ALSIMREIRD  660
KVISYEKSLR DQRVDSHVST ANFAYNPVNE DFTDDALPIS LSTKGWDLTQ GQSKRSRKKK  720
LATPTVLDTL KKKTKRAYNK RRNATANTLN TAATVTDCVT DGTNVQQNPV NEGWPLTSTS  780
APETFPYGVE NISFDLSQYN NAPSFHWPES SSRSQLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188520.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G245900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318487.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A1Z5RFV50.0A0A1Z5RFV5_SORBI; Uncharacterized protein
STRINGSb06g031160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1398944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-106FAR1-related sequence 6