PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G247000.1.p
Common NameSb06g031230, SORBIDRAFT_06g031230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 173aa    MW: 18628.7 Da    PI: 6.3564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G247000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18655255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          +++GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + g
  Sobic.006G247000.1.p  6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMSG 55
                          69******9.**********8.....334**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.75E-30565No hitNo description
Gene3DG3DSA:3.30.730.105.6E-33664IPR001471AP2/ERF domain
SMARTSM003806.6E-38669IPR001471AP2/ERF domain
PROSITE profilePS5103220.85663IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-20665IPR016177DNA-binding domain
PfamPF008474.4E-11653IPR001471AP2/ERF domain
PRINTSPR003671.9E-10718IPR001471AP2/ERF domain
PRINTSPR003671.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLMSGPAART  60
NFPLSVSGGG GTLSPTLRAK LEKCCTAPAQ EPQHGADVSR TGGGVGRDDV DGSSRKEVQA  120
AVKVDPDADD PDGEEYIEEM IRELTYYGPV EIQQHHPPSA SSAAAASSSA IR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17369269ATERF1
3gcc_A2e-17369269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G247000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083552e-49AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448671.11e-124ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-43ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLC5Y9H91e-123C5Y9H9_SORBI; Uncharacterized protein
STRINGSb06g031230.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-27ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]