PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G255300.4.p
Common NameSb06g031900, SORBIDRAFT_06g031900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 946aa    MW: 103692 Da    PI: 6.2128
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G255300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35e-22143243199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++i  ++++r++lt+GW+ Fv a++Lk+gD+v+F 
  Sobic.006G255300.4.p 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 229
                           89*********************999*****9555555.49***************7.5667799************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             ++++ +l+v+v+r+
  Sobic.006G255300.4.p 230 --RDEKSQLLVGVRRA 243
                           ..4577778*****97 PP
2Auxin_resp110.32e-36268350183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaas++  F+++YnPr+s+s Fv+++++++ka++ + svGmRf m+fete+s +rr++Gt+vg+sd+dp+rWpnSkWr+L+
  Sobic.006G255300.4.p 268 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYLQPSVGMRFAMMFETEESIKRRCTGTIVGISDYDPMRWPNSKWRNLQ 350
                           79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-42133271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-39136256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-19142242No hitNo description
PfamPF023621.6E-19143243IPR003340B3 DNA binding domain
SMARTSM010191.0E-20143244IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901143244IPR003340B3 DNA binding domain
PfamPF065073.9E-32268350IPR010525Auxin response factor
PROSITE profilePS5174523.418842926IPR000270PB1 domain
PfamPF023097.5E-9844929IPR033389AUX/IAA domain
SuperFamilySSF542774.38E-8861921No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MASAQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTKKIPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS  120
ETDVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN  180
QELIVRDLHD NMWTFRHIYR QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR DEKSQLLVGV  240
RRATRQQPAL SSSVLSTDSM HIGVLAAAAH AASSGGSFTI YYNPRTSPSP FVIPLARYNK  300
ATYLQPSVGM RFAMMFETEE SIKRRCTGTI VGISDYDPMR WPNSKWRNLQ VEWDEHGYGE  360
RPERVSLWDI ETPENMVFPS PLNSKRQCLP SYAVPGLQIG SVNMSSIPRA QGSPFGNLQQ  420
MPGSGSDLAL LLLNQSGQNL GSPIACQQSS FSSIIQNAKH SYFPPSTFGA STGSMKQETM  480
PSNEAPQQLN ALGIQKGDQV SCEVQPGIDS ISAREMSVKP RGPRSTDSYS SQSISDQNGK  540
GEPRTKSRRS KKSSSHKTIS DKSELSSLPS QICDKQRHGS EPTLVDCGAE QATCGNIEDS  600
SGAPTRGDFA GELQVLEVEQ HELLSPPKLE SSKSPDGGKS VSSFPNQGCF SQFLEGLDWM  660
IPPSYYQDSN GIQSATASDN IFNPSEGIPS AMNTDGMEAF QTSCLSECFP NSIQEFINSP  720
DINTLTFMSP EMQHLDAQHD GSNLPSTSNS YVQMSFSEES QSASLSGLHM EAIHINSSCS  780
QPLATGSFDA GTFSKLSNMK ECQALPLQEI HNGSMGTPSC SMDAAAEYSM DRSVKPMKPP  840
VRTYTKVQKL GSVGRSIDVT RFRDYHELRS AIACMFGLQG KLEHPGGSDW KLVYVDYEND  900
VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGVHVLND CIQIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01737531392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.129260.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G255300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666320.0BT066632.1 Zea mays full-length cDNA clone ZM_BFb0041D15 mRNA, complete cds.
GenBankJX4285060.0JX428506.1 Zea mays subsp. mays clone pUT3104 ARF4 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318282.10.0auxin response factor 11 isoform X2
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A1B6PNX40.0A0A1B6PNX4_SORBI; Auxin response factor
STRINGSb06g031900.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]