PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G256200.1.p
Common NameSb06g031970, SORBIDRAFT_06g031970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 472aa    MW: 50947.8 Da    PI: 6.7898
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G256200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94e-27273337155
               G2-like   1 kprlrWtpeLHerFveaveqLGGse..........kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r+rWt++LHerFv++v+qLGG++          +AtPk il+lm+ +gLt++h+kSHLQkYR+
  Sobic.006G256200.1.p 273 KTRIRWTQDLHERFVDCVNQLGGADifscccvtlaEATPKGILKLMNSDGLTIYHIKSHLQKYRI 337
                           68*********************9755555555558****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.16E-14271337IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-27272338IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18273338IPR006447Myb domain, plants
PfamPF002498.3E-8277336IPR001005SANT/Myb domain
PfamPF143792.3E-21367413IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MMNAKKIKLH DYHRYGSPLC DPQLFPATAA AGLPFHPAPG LVGSLPQPHG GGWVHEEHTT  60
TTPRSVLATQ GLQGGSCVGS DAAAFFAAEE LMMGMPRFDC PLGGTPPPLP DLTAFAKRPP  120
FGRPTTEAEQ LYHRRPVDPL PIRDGSVRTY YVQPQQRDGA TEAPPSLELP FQRRQQQQQQ  180
QQQERVHGLF GNASAGRLLG GTGGEPKAHS FPAHVAPSTL LPVMEAPAVM QQSPMENLLS  240
RSCSIIGAAA THVGSGNAVA AAAAAPGQGA PSKTRIRWTQ DLHERFVDCV NQLGGADIFS  300
CCCVTLAEAT PKGILKLMNS DGLTIYHIKS HLQKYRIAKY MPASTSEGKQ EKRAAGNDVQ  360
NLDPTGMKIT EALRFQLDVQ MRLHEQLEIQ RNLQLRIEEQ GKKLQKMLEE QMKVSRTVME  420
PQQGAAAAAA AAFLGVGERD EEEVEDAFDD VQEQLLAAMA SSDAGFQSKI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-19273340158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-19273340158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-19273340158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-19273340158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-19273340259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G256200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685131e-119BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBankEU9574861e-119EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBankKJ7268311e-119KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318356.10.0uncharacterized protein LOC8070283 isoform X2
TrEMBLA0A1B6PNW50.0A0A1B6PNW5_SORBI; Uncharacterized protein
STRINGSb06g031970.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-58G2-like family protein