PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G256500.2.p
Common NameSb06g032000, SORBIDRAFT_06g032000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 234aa    MW: 24286.3 Da    PI: 9.7324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G256500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-093358227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+ C  +  t  Ck+Gd+C+FaH++
  Sobic.006G256500.2.p 33 KTRMCTKYNTTEGCKFGDKCHFAHSE 58
                          9***********************95 PP
2zf-CCCH37.44.4e-12200225127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt+lC +f + G C +GdrC+FaHg+
  Sobic.006G256500.2.p 200 YKTKLCENFVK-GACTFGDRCHFAHGE 225
                           9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-143063IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-83062IPR000571Zinc finger, CCCH-type
SMARTSM003560.0513158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5823159IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-63358IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-1492170IPR004088K Homology domain, type 1
SMARTSM003223.1E-1199169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-1599169IPR004088K Homology domain, type 1
PROSITE profilePS5008415.179100164IPR004088K Homology domain, type 1
CDDcd001051.20E-14102164No hitNo description
PfamPF000134.1E-11102165IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-14198229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9198229IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-8199225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.103199226IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9200225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLNLGSPAVS APSRTHVDHA ALTGASHQAS MGKTRMCTKY NTTEGCKFGD KCHFAHSERE  60
LGKPAYMSHE GPPMGGRYGG RPEPLQQASM GPPAGNFGAS ATAKISVDAS LAGGIIGKGG  120
VNTKQISRVT GVKLSIRDHE SNPSQKNIEL EGNFDQIKQA SDMVRDLIAT ISASMPAKNL  180
SASAAPAGGR GGGLGGRSNY KTKLCENFVK GACTFGDRCH FAHGETEQRR GAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.206040.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G256500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9744520.0EU974452.1 Zea mays clone 449633 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-171zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-103C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A1B6PNX01e-172A0A1B6PNX0_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-171(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]