PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G266400.1.p
Common NameSb06g032870, SORBIDRAFT_06g032870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 452aa    MW: 49390.2 Da    PI: 7.3407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G266400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.3e-15319412393
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++++++
  Sobic.006G266400.1.p 319 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHGLQAKDILIIYR 404
                           789******************999886432..34556777775555*********888888888888.9*******************7 PP

                           -SSSEE..E CS
                    B3  85 dgrsefelv 93 
                           ++r ++++v
  Sobic.006G266400.1.p 405 NKR-SGRYV 412
                           664.44455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-24312419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-17315412IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-10317419IPR003340B3 DNA binding domain
PfamPF023621.2E-11319412IPR003340B3 DNA binding domain
CDDcd100178.70E-18321412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MANAKGSSAG AAGAGHADLG RAISHEQHQA FMMASVHRAA PGAANVHQQH FHQYPAGLIR  60
APVPMPVHVP VSQTPYSAQI AVPPPQPLIP PPDHRLHSLP PTGCYQDYSP YGNTASLQHT  120
AARGFADWGV HNNAIVSLAH ATSFANGSNN INSNGLLHQN LSPYTTHTWT TTYVQRPYNT  180
AYAPATMNML QTPSFHSNNH EKESVFPSTS PCKDSTPSVL NCAVFSNSFN MGPSGTPTSP  240
FQLTSPSSTN YTSTQIFEET NNLEDTSRVF GGGDNESNNS EEPDPTPAVE MEDLNQGNGH  300
ISFTNKKVNC QDYRMVLRKD LTNSDVGNIG RIVLPKKDAE PNLPILEDKD GLILEMDDFE  360
LPAVWKFKYR YWPNNKSRMY ILETTGEFVK RHGLQAKDIL IIYRNKRSGR YVARAVKAEH  420
IPAPGCECIK AGNPREECGF SVSPSVKKII T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-343024133109B3 domain-containing transcription factor LEC2
6j9c_D3e-343024133109B3 domain-containing transcription factor LEC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60640.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G266400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752820.0EU975282.1 Zea mays clone 486382 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448770.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLA0A1B6PP250.0A0A1B6PP25_SORBI; Uncharacterized protein
STRINGSb06g032870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-35B3 family protein