PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G267900.1.p

Common Name

Dof21, Sb06g033010, SORBIDRAFT_06g033010

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 225aa MW: 23265.7 Da PI: 7.7729

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G267900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.5	9.2e-36	51	107	2	58
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++++l+cprC stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r++ Sobic.006G267900.1.p 51 QQQQLECPRCRSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRS 107 6899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.6E-33	53	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-21	55	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.894	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAPAASILSA TAAAAGASKR PADSDAELSL DSSALQQQGD EAVRKGRQTR QQQQLECPRC 60 RSTNTKFCYY NNYSTAQPRH FCRACRRYWT HGGTLRDVPV GGASRRSSGG GGKRRRVSAE 120 PSSAASSSPP PLPAASLADA CLPDLTSAFP FLSDGSFFPQ FDVGSGVALA PAAFSSSWQS 180 VVPDFYDGLA PWDDGAAAGT AAGGFVGAWG DIAGLDLSWT PPGN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G267900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582414	0.0	KC582414.1 Sorghum bicolor dof21 protein (dof21) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448779.1	1e-159	dof zinc finger protein DOF5.8
TrEMBL	C5YAJ6	1e-158	C5YAJ6_SORBI; Dof-type zinc finger protein 21
STRING	Sb06g033010.1	1e-159	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G267900.1.p
Entrez Gene	8076466

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]