PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G276566.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 118aa    MW: 13760.2 Da    PI: 11.0462
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G276566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK48.91.3e-152970950
                RWP-RK  9 dlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                          d+  + +lp+++AA  Lg++  ++ r+CR++GI+RWP+Rki 
  Sobic.006G276566.1.p 29 DIVWFIHLPMRQAAMALGMSCATIQRTCRRNGIQRWPSRKIG 70
                          5666789*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.413393IPR003035RWP-RK domain
PfamPF020421.5E-133371IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MPSSSVIQQH SHATDPSSSI SRRKKCTDDI VWFIHLPMRQ AAMALGMSCA TIQRTCRRNG  60
IQRWPSRKIG ALDRKIAKLE NNMFLKRDRV KRAKMLDEWN KLSRERMDIY CYFMSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G276566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5RGY11e-81A0A1Z5RGY1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.15e-10NIN like protein 7