PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G278900.1.p
Common NameSb06g033970, SORBIDRAFT_06g033970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 519aa    MW: 56284.8 Da    PI: 6.0184
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G278900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.2e-24127228199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +a+++         ++ +   l+++d++g+ W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF
  Sobic.006G278900.1.p 127 FTKELTQSDANNGGGFSVPRYCADHIfptldfdADPPVQ--NLVMRDTRGNPWQFRHIYRGTPRRHLLTTGWSRFVNAKLLVAGDIVVF 213
                           89******************999777*****96555555..6*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                           +  +r+++ l v+++r+
  Sobic.006G278900.1.p 214 M--RRTNGDLIVGLRRT 228
                           *..6689999***9997 PP
2Auxin_resp49.91.3e-17267337169
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdl 69 
                           aa+ a+++ +F+v+Y Pr+++ eFvv++++ve+al +++ +G+ ++m+ +e ed +++ +  G v ++++ 
  Sobic.006G278900.1.p 267 AARLAAEGRPFTVTYFPRQAAGEFVVPRDEVERALATRWEPGTEVRMQvMEAEDTRRTVWaDGHVKALHQN 337
                           678999*****************************************858*********999***999873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-28121230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-35124230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-22126227No hitNo description
PROSITE profilePS5086313.225127229IPR003340B3 DNA binding domain
PfamPF023626.2E-22127228IPR003340B3 DNA binding domain
SMARTSM010192.5E-18127229IPR003340B3 DNA binding domain
PfamPF065078.9E-13267349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAPQPPLAPA DGIVDRDVWL ACAVPLSRLP TVGAEVYYFP HGHAEQCPAH LPAPIPAPHL  60
FPCIVTNLTL GADDKTNEVF AKISLSPGPH HAPAAASSLV GPDPTTTTKE SESDSPPHPQ  120
PQELSYFTKE LTQSDANNGG GFSVPRYCAD HIFPTLDFDA DPPVQNLVMR DTRGNPWQFR  180
HIYRGTPRRH LLTTGWSRFV NAKLLVAGDI VVFMRRTNGD LIVGLRRTPR YPLVFPGADA  240
NANANQDQQP PPRNARARVP PQDVMEAARL AAEGRPFTVT YFPRQAAGEF VVPRDEVERA  300
LATRWEPGTE VRMQVMEAED TRRTVWADGH VKALHQNIWR ALEIDWDDSS PLSLKLSRFV  360
NAWQVQLVAY PPLPNTVRIC DPIAPLCPGD VSYPLIGPES QAMAMILGSP IPAGMQGARH  420
TGPCAAPSES SAMLTTQLLF PLTNTDFQMP PRTSPSASSE ILDPEGASPP NNSVSMRPAE  480
LPVQVKSIQL FGATITPHVV QSATNGDGMA DGNVGKDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-551334850372Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G278900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673270.0BT067327.1 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds.
GenBankJX4285170.0JX428517.1 Zea mays subsp. mays clone pUT3116 ARF5 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448828.10.0auxin response factor 13
SwissprotQ7XSS91e-141ARFM_ORYSJ; Auxin response factor 13
TrEMBLC5YB360.0C5YB36_SORBI; Auxin response factor
STRINGSb06g033970.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP1320045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-86auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]