PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G015500.1.p
Common NameSb07g001400, SORBIDRAFT_07g001400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 375aa    MW: 41430.7 Da    PI: 9.8234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G015500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-49451702128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kewyf+++rd+ky++g+r+nr+t sgyWkatg d+
  Sobic.007G015500.1.p  45 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADR 132
                           79***************************.89***************888889************************************ PP

                   NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +v+++ ++ +glkktLvfy g+apkg +++W+m+eyrl
  Sobic.007G015500.1.p 133 TVYVEVKRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 170
                           *****9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.01244190IPR003441NAC domain
SuperFamilySSF1019415.1E-5544190IPR003441NAC domain
PfamPF023654.2E-2446170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTQAGRRRSS STMGGASGDH HQQQQQHGGG DDGQLQQGGG GDMVMPGFRF HPTEEELIDF  60
YLRRRVEGKR FNIELINLVD LYRYDPWDLP ALASIGDKEW YFYVPRDRKY RNGDRPNRVT  120
PSGYWKATGA DRTVYVEVKR PIGLKKTLVF YVGKAPKGLR SSWIMNEYRL PSGEADRYQK  180
EISLCKVYKR PGIEDNFHLS TTTTRSSSSK AAATMEKKHH RTAASPRLAP MFDGGHSSVH  240
MNKPYSGANT TIAMTSSAAA RAATMAPQTS MFLSAPSLSS TTSTEEDGTS LYHMKGANPP  300
MLTSSTHALL NANSATMATI PIDELSRAIG SYNSQGNPNQ PLPSQGPLLP FPSMEKIWDW  360
NPLLESPKVC TSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-514619019165NO APICAL MERISTEM PROTEIN
1ut4_B2e-514619019165NO APICAL MERISTEM PROTEIN
1ut7_A2e-514619019165NO APICAL MERISTEM PROTEIN
1ut7_B2e-514619019165NO APICAL MERISTEM PROTEIN
4dul_A2e-514619019165NAC domain-containing protein 19
4dul_B2e-514619019165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75550.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G015500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607430.0BT060743.1 Zea mays full-length cDNA clone ZM_BFb0041P20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443756.10.0NAC domain-containing protein 35
SwissprotQ9ZVP82e-93NAC35_ARATH; NAC domain-containing protein 35
TrEMBLC5YM020.0C5YM02_SORBI; Uncharacterized protein
STRINGSb07g001400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.24e-93NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]