PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G020500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 781aa    MW: 86120.5 Da    PI: 4.686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G020500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08630672145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           rg+W++ + +l++++++q+G++ ++ I + ++  +t+ q++ ++ 
  Sobic.007G020500.1.p 630 RGKWSKSDTDLFYEGIRQFGSD-FAMIQQLFP-DKTRHQVRQKFK 672
                           89********************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.9E-24623703No hitNo description
SuperFamilySSF466897.18E-10624678IPR009057Homeodomain-like
PROSITE profilePS5129310.335628679IPR017884SANT domain
Gene3DG3DSA:1.10.10.604.8E-5629676IPR009057Homeodomain-like
SMARTSM007171.2E-8629677IPR001005SANT/Myb domain
CDDcd001679.08E-6632672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MIDDEANFDN MLDAAEEVQA TAKFRPKQRP KPQKTALSSR SAAPNPTEET GDGKVGALNQ  60
VNSSKELTSQ ERTSLMCPGS ESVDTVAGSQ GTLGTPSGDA LTVPLGPLAG ASAADKISQD  120
GEHNDDPSKL AIHQESSVVS DINVSPNSSC GKAIDDIVEF GDMCDAQVEE ERVPKFQPKV  180
QTKLLKETAK SRKTNQKLEA STVDVVTQNG KGNNIETRFR DDQLQDPKSH ESVQIPDSEG  240
LLATDNCKSC NLANLVLEES VQEETIAKFH PKLQPEPGKA SSKVAVTKNN VAAVAPMEET  300
ITGPAAWSPQ AVHATVDVDY HNELISPPTD GTQSMVGKVP GREKGKSKSV SFSLSDASGV  360
ATPTDTNSEM GNIGKSCSDK LTDENLSNSS QQMTEKHSVT EDQYSNDQDH EGEPLDHTVE  420
QQPNSDVGEI ASSMKLRCRK KLQKVGTPNH TVDDCFDEDC VEPSLAEEDN DSGDDYTTGN  480
KRKARKKSRD GVEESQQQKV QKNKSKVSSR GRKRTLKDEL AAKPEKKKLT HRIRQRTPKE  540
IKTLLESEEI DPMKLSAAHL RLLQEARERV NPKEIPSGPS SNSRSFGLED MDDLDYRDEE  600
ARFFDNDGTE NHVQNTTKLN YQSYMNKPAR GKWSKSDTDL FYEGIRQFGS DFAMIQQLFP  660
DKTRHQVRQK FKSEEKKNPL LVHDAIFHRS GDNLYFKKVI KQLNIEDVVL PEINNAQKQD  720
GASSERGPGN ENVLDDFNEE ENSSNWSNEE HGGQMDDVQE EHDLGNGGDD DDLGDVFDWY  780
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.98170.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G020500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9433810.0EU943381.1 Zea mays clone 1616040 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320644.10.0transcription factor TFIIIB component B''
TrEMBLA0A1B6PF400.0A0A1B6PF40_SORBI; Uncharacterized protein
STRINGSb07g001795.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Representative plantOGRP1010535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-33MYB_related family protein