PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G047500.1.p
Common NameSb07g003880, SORBIDRAFT_07g003880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 254aa    MW: 27305 Da    PI: 4.6693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G047500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.64.4e-2757148192
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+kvltpsdv+k++rlv+pk++ae++      +++l ++d  g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v+F++    +
  Sobic.007G047500.1.p  57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFQDCGGALWQFRYSYWGSSQSYVMTKGWSRFVRAARLAAGDTVTFSRGAGGG 145
                           89************************555567789************************************************755466 PP

                           E.. CS
                    B3  90 fel 92 
                           +++
  Sobic.007G047500.1.p 146 GRY 148
                           655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-3749157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2854154IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-2555140No hitNo description
SMARTSM010195.7E-2057156IPR003340B3 DNA binding domain
PfamPF023622.4E-2457149IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28157156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYMDLSLGTL VQDTQEVQEE DQEDNLDQQR AIGQDLHQQG GGGGGEPSHG VEREHMFDKV  60
LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFQDCGGA LWQFRYSYWG SSQSYVMTKG  120
WSRFVRAARL AAGDTVTFSR GAGGGGRYFI EHRHCQRRRR RDVDISFGDA ATTMPPWPIA  180
VGVQAMNGGA TMAVETASAA IAGTGHDSEV GPSAARSFRL FGFNVECSGD DAPAAPASAE  240
VEYVDVDGDD DYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-42521543112B3 domain-containing transcription factor NGA1
5os9_B1e-42521543112B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.212970.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G047500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-149KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443891.10.0putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD56e-75Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLC5YHA50.0C5YHA5_SORBI; Uncharacterized protein
STRINGSb07g003880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Representative plantOGRP1448744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-44B3 family protein