PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G047700.1.p
Common NameSb07g003900, SORBIDRAFT_07g003900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 664aa    MW: 73791.7 Da    PI: 4.5132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G047700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52121451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lp GfrFhPtdeelv++yLk k++g+ ++++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatg
  Sobic.007G047700.1.p  12 LPLGFRFHPTDEELVTHYLKGKITGQINSEAEVIPEIDVCKCEPWDLPdKsIIQSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATG 100
                           699************************9999****************96446677778******************************* PP

                   NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ ++sk    k++++g+kktLvf++grapkge+t W+mheyr 
  Sobic.007G047700.1.p 101 KDRIIKSKgdkrKQHTIGMKKTLVFHRGRAPKGERTGWIMHEYRT 145
                           *******988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-585166IPR003441NAC domain
PROSITE profilePS5100557.15412166IPR003441NAC domain
PfamPF023659.6E-2813144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAKTAVMELR TLPLGFRFHP TDEELVTHYL KGKITGQINS EAEVIPEIDV CKCEPWDLPD  60
KSIIQSDDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRIIKSKGD KRKQHTIGMK  120
KTLVFHRGRA PKGERTGWIM HEYRTTEPQF DSGEQGGYVL YRLFRKQEEK TERPSPEEMD  180
RSGYSPTPSR SSPDNLEVNE EANTPLNKES PESALHDPIE LPNSVETHVG SVTRWLADRN  240
DNLVATAPDV SRIPSHGHAA VVPKVDPSAG ASAHLVNPQN GNDDYNNFVS GFPPILPLEN  300
AFFSDIQQGA FGFDGIMNPP DALDAFLNQT LVDPDEHSSR TSKVQYDSDI PTEFEKQWNM  360
QVEPQDDLWW ANIGFEPDEP NPLLPYGTTD QDVLSVDSAA DSFNELFNSM EDPNVGMTGI  420
TLRPQQLDST VQPSHVFANH GDALRRMRLQ VECREVITKY DSEDEVSCVV TPDCLNESVE  480
STAVKDVVSD GDEAESTGIV IRSRHPAPSS SLESSFTQQG TAMRRLRLQS GLNKGPCPSS  540
DDSSSCIIDE SESQHKTEKA EIEEDASTNL TGSVDDLPGN SYDDEQKNIS EHGAETAVPE  600
AKSVLRLRKT SEESNKDVKQ QEGCLEPHVR APMQRGGFQS YIIWLVLLVA LLLLLCVGAY  660
GWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-461116716166NO APICAL MERISTEM PROTEIN
1ut4_B7e-461116716166NO APICAL MERISTEM PROTEIN
1ut7_A7e-461116716166NO APICAL MERISTEM PROTEIN
1ut7_B7e-461116716166NO APICAL MERISTEM PROTEIN
3swm_A8e-461116719169NAC domain-containing protein 19
3swm_B8e-461116719169NAC domain-containing protein 19
3swm_C8e-461116719169NAC domain-containing protein 19
3swm_D8e-461116719169NAC domain-containing protein 19
3swp_A8e-461116719169NAC domain-containing protein 19
3swp_B8e-461116719169NAC domain-containing protein 19
3swp_C8e-461116719169NAC domain-containing protein 19
3swp_D8e-461116719169NAC domain-containing protein 19
4dul_A7e-461116716166NAC domain-containing protein 19
4dul_B7e-461116716166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.102050.0ovary| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G047700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445085.10.0protein NTM1-like 9 isoform X2
TrEMBLC5YHA70.0C5YHA7_SORBI; Uncharacterized protein
STRINGSb07g003900.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-72NAC 014