PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G050500.1.p
Common NameSb07g004100, SORBIDRAFT_07g004100
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 377aa    MW: 39101 Da    PI: 7.5613
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G050500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32185238255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.007G050500.1.p 185 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 238
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-29182239IPR009057Homeodomain-like
SuperFamilySSF466892.15E-15183239IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-24185238IPR006447Myb domain, plants
PfamPF002496.4E-7186237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPASA TPHDHHHHHG ATALSARFLA AAAAGGGGSN GVVPGGNPAA  60
SMAPSSLQLP MPMPLPLPVQ LPMPVPPNAA AAAGAGGGLY YHPDTAAAAA MLRPIRGMPL  120
YQHPHTHAVP PPTFPPPHAA GAGAGPCFCE PCHVAAGAWR RAGCGVGARV AGLGFPPAKR  180
AARAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK  240
NTERPAASSD QADGFENGSA GEICDDNSSL DLHGSAGRPE SAAARHGRLA ACNDHGSSTG  300
AHGALWNSSS REDWTGFPSD SNTGSMSMHS RSLKDQTMHS KSLEILSDMN SSCVSETTSC  360
ASELNLEFTL GPRIRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G050500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570080.0EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320192.10.0probable transcription factor KAN2 isoform X1
TrEMBLC5YHD10.0C5YHD1_SORBI; Uncharacterized protein
STRINGSb07g004100.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.18e-38G2-like family protein