PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G055100.1.p
Common NameSb07g004450, SORBIDRAFT_07g004450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 196aa    MW: 21232.3 Da    PI: 6.8477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G055100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11133179148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT +Ed  l+d v qlG g+W  Ia+ ++ g  +kqc +rw ++l
  Sobic.007G055100.1.p 133 KGSWTMQEDSTLKDKVVQLGEGRWLVIAESLP-GWIGKQCHERWINHL 179
                           799*****************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.724128183IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-17128184IPR009057Homeodomain-like
SuperFamilySSF466892.47E-13129186IPR009057Homeodomain-like
SMARTSM007177.0E-10132181IPR001005SANT/Myb domain
PfamPF002498.6E-10133179IPR001005SANT/Myb domain
CDDcd001676.68E-10135179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSWPPPCSGA HSWQYSSTVA CRGGGDAVAY FLSHLGTVVA CDLARRVFTE PHRILLAYHK  60
DSIDVVACSG AALCRGALGV PLSRAVPAMI DPSFTTLLAN LASCSNVNNG IPFDIAAAAQ  120
PQIRSNNKPM SIKGSWTMQE DSTLKDKVVQ LGEGRWLVIA ESLPGWIGKQ CHERWINHLH  180
PDIRMDDDEC FTLPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G055100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5YHH41e-143C5YHH4_SORBI; Uncharacterized protein
STRINGSb07g004450.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2265446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.19e-17myb domain protein 3r-3