PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G056700.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 261aa    MW: 27830.5 Da    PI: 8.4196
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G056700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.8e-14119178155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV++ k++g+++A+++d  s+  g  ++ k+++lg++  +e+Aaka++ a++k++g
  Sobic.007G056700.2.p 119 SKFHGVTRLKWSGKYEAHLWDnTSQvKGrkRKgKHVYLGSYVNEEQAAKAHDLAALKYWG 178
                           79*******************665596675336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-13119189IPR016177DNA-binding domain
CDDcd000184.83E-14119190No hitNo description
PfamPF008471.9E-10119178IPR001471AP2/ERF domain
SMARTSM003807.0E-18120194IPR001471AP2/ERF domain
PROSITE profilePS5103216.291120188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-12120188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATVHPPSPA GPTAPLPPQE EEEEEVERHV GDAVPDPPAV VSGEPDAAGA EASGGGGEIA  60
ALDKQLAVVV GGGGGSGDER RLAGAGAVAG AVAASAAAAG GGGKLVAEAM RKYAAPRSSK  120
FHGVTRLKWS GKYEAHLWDN TSQVKGRKRK GKHVYLGSYV NEEQAAKAHD LAALKYWGTG  180
PNTKLNFNIS DYEKEIEVMK TMSQDEFVAY IRRSVVQSKK LYCSSYVIII YCHYGLLLQA  240
KQLFLKRYFI IPWCNQTQGW *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.107800.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G056700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632001e-141EU963200.1 Zea mays clone 258991 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320772.11e-151AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1B6PFT90.0A0A1B6PFT9_SORBI; Uncharacterized protein
STRINGSb07g004580.11e-150(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.16e-35AP2 family protein