PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G069750.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 803aa    MW: 92646.1 Da    PI: 8.3144
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G069750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-1188200177
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................teker 52 
                           ++Yn+YAk++GFs+r+++s++s  ++e  k +fvC+keg+ ++++                                         k+r
  Sobic.007G069750.1.p  88 EYYNSYAKRTGFSIRTNTSRRSAITREKQKVQFVCNKEGFGRKRRVVaqlvdgitcysdndeakeedtaqeeedeqvekrkkfdGCKKR 176
                           69**************************************999988789***************************9999999877888 PP

                  FAR1  53 rtraetrtgCkaklkvkkekdgkwe 77 
                           ++++   t+Cka+l+vk    ++w+
  Sobic.007G069750.1.p 177 KREKMLYTNCKARLVVKII-GSRWQ 200
                           899999**********998.66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1088200IPR004330FAR1 DNA binding domain
PfamPF105519.6E-30321414IPR018289MULE transposase domain
PROSITE profilePS509669.371593629IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-4601625IPR007527Zinc finger, SWIM-type
SMARTSM005750.0026604631IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MNQQILPGIS EDGHAGLAET EPAVSEEVIP TISEIRLSFE QARIEDKNED STTNPVVAEV  60
AEEEEEVWST LEMPHNGMSF ATLDEAREYY NSYAKRTGFS IRTNTSRRSA ITREKQKVQF  120
VCNKEGFGRK RRVVAQLVDG ITCYSDNDEA KEEDTAQEEE DEQVEKRKKF DGCKKRKREK  180
MLYTNCKARL VVKIIGSRWQ PSLKKFLRSH RGIPKQEKDF IVLLHGCNLS TGRIMQLMSE  240
FYGSAQLVPY DGKQVSNFRS TIHKTEKFKD MQETVDYFRA LKEEDPEFFY KIKLDDNHRV  300
ENLFWVDSAT RRAYKEAYND CVSFDATYMT NIYEMPCTPF IGINRHCQTF QLGCAFIRNE  360
KTTTYEWLFL TFLEAMDRKA PLNITTDQDP AMRAAICIVF PNTTHRNCRW HIMDKFSGTI  420
GPILAKNDEL NEEFVDCLNH TVSPEDFESK WATMHFQHLY HIRQSFIPAY YMHSFFPFLQ  480
STQRSEGFNA LLKKYVNPNL SVLQFVRQYQ KIQEKCLVAQ DGQDFRTDEN ERRRWSRHPL  540
EKHASTVYTK NMFYRFSKEF EKTAEYDVKP IGQFQYWLEP NNSFVFGYGK RNYLVTAIEE  600
DESYCCECSK FDRDGIICCH IMRVMVRMGV KLIPERYILK RWTQQAIASD TNQVQNVNAP  660
VGLVARGMPL TSEKTLRLTN ATTAFAAIAV EGCTNDENYA ILEKHIKEMR SEFEEIKKRM  720
MANRQNTSGT KGAQNGTGVS TLTGLSLQTA GAMAGPNTSS VANPPKSKAK GRRKEKAHKK  780
GMNGQAKRKN KCSICKSYDH NA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G069750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R8G40.0A0A1Z5R8G4_SORBI; Uncharacterized protein
STRINGSb05g008130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1361125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-74FAR1-related sequence 5