PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G070100.1.p
Common NameSb07g005540, SORBIDRAFT_07g005540
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 225aa    MW: 25144.7 Da    PI: 4.4521
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G070100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC130.17.6e-4159160299
                 NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           l++fw+ q   i+++t+fk h+lPlarikki+kad ++ k+++ eaP l++kace+fi eltlr+wlh+ee  rrtl+k d++aa+++t
  Sobic.007G070100.1.p  59 LQAFWSGQlaeIKQTTNFKTHSLPLARIKKIMKADSNIpKRVAGEAPLLFAKACEMFIQELTLRAWLHTEEDMRRTLQKKDVTAALAST 147
                           899***9988899************************9678************************************************ PP

                 NF-YC  87 difdflvdivprd 99 
                           ++fdflv +  +d
  Sobic.007G070100.1.p 148 EVFDFLVADSSTD 160
                           ******9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.04E-2645153IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.2E-2971143IPR009072Histone-fold
PfamPF008083.3E-1880144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDTEGQPSES AVSEGVTNGD AIPSDFQDDA PVIQPPLSHH HQVASQSQQD DHCHCQQPLQ  60
AFWSGQLAEI KQTTNFKTHS LPLARIKKIM KADSNIPKRV AGEAPLLFAK ACEMFIQELT  120
LRAWLHTEED MRRTLQKKDV TAALASTEVF DFLVADSSTD NKPKGNGEGL PPPTTAKDDD  180
DSYGDYYWDD YSPPWSPEPP SPDLRNVTCD DPRYYTYIHD YYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-3666154390NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137RRTLQKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G070100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321034.11e-168nuclear transcription factor Y subunit C-3
SwissprotQ8LCG71e-41NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLC5YID91e-167C5YID9_SORBI; Uncharacterized protein
STRINGSb07g005540.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972668
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-44nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]