PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G072133.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 478aa    MW: 53107.4 Da    PI: 7.8115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G072133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.17.5e-1349106259
                           --SS-EEEEEEE--TT-SS-EE.EEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprs.YYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgy W+  G  e+ gs   r   Y C++a+C+vkk v  sa d++++e++ +g+Hnh+
  Sobic.007G072133.1.p  49 DDGYIWKNSGLQEILGSGSGRLiCYECSQANCMVKKSVVLSA-DGQILETVLRGSHNHP 106
                           8******************99637****************99.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.62E-1142108IPR003657WRKY domain
SMARTSM007748.8E-648107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-1048108IPR003657WRKY domain
PfamPF031062.2E-1049106IPR003657WRKY domain
PROSITE profilePS5081110.55649108IPR003657WRKY domain
PROSITE profilePS5080810.667199254IPR003656Zinc finger, BED-type
SMARTSM006149.7E-16199250IPR003656Zinc finger, BED-type
PfamPF028921.5E-8202247IPR003656Zinc finger, BED-type
SuperFamilySSF576672.38E-8202248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRRISGLMEN QSAHPRHGMV DQGFRPFTTT PLSSSVNAAP VMMPIWSADD GYIWKNSGLQ  60
EILGSGSGRL ICYECSQANC MVKKSVVLSA DGQILETVLR GSHNHPRPSE ICPRDVPTGY  120
IPDSQHYAYV PSEMYVPGAS IPQTEGGEQE QLGSSSDSDE EDDGEQRDDG HVASASTTER  180
PVVAPAERRT RSGTPHRKRP KSKVWEEFTK IFRDGKLQAA VCKHCESSLS AKTTGGTSHL  240
KRHLQSCPGR PSTGRVQLQR PFSHPNSSVQ KNLNLDQNKS LELLIKVLVS NLFSSPFTSS  300
TIFRQFWAGI SPTNDMVSPA AIEEKFLSIF QTEKLKLQEE IELAPGGVFL TVAGSSLELK  360
CVIFLMVHFI DKEWNLNRKI IRCCFTGCED SDAEYYASMF PFLKSYYYIF NGNVRAVEIE  420
IVKEVVQNWK LEWKLLGISS SKSLCDASVP ALEKNLTGQN YLLAKWINTK KSCHACK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60920.0callus| embryo| pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G072133.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320383.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1
RefseqXP_021320384.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1
TrEMBLA0A1Z5R8G00.0A0A1Z5R8G0_SORBI; Uncharacterized protein
STRINGSb07g005740.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Representative plantOGRP1143025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.21e-11WRKY DNA-binding protein 26