PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G076800.2.p

Common Name

Sb07g006170, SORBIDRAFT_07g006170

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 231aa MW: 26324.1 Da PI: 9.865

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G076800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.2	1.1e-16	132	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +t+s+v+ +l lp f+++h +k ++ t+tl de+ + + + kk+ l++GW++F+ +++L +gD +vF+l++r++ Sobic.007G076800.2.p 132 FIKPMTQSHVTGGFWLGLPTGFCRKHL-PK-RDETITLVDEDDVESNTLYLAMKKG----LSGGWRGFAIQHKLVDGDCLVFQLIERTK 214 89**********************5.33.5669****8888888555555....9**********************9888 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ Sobic.007G076800.2.p 215 F--KVYIIRA 222 8..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.1E-21	124	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-24	125	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.64E-27	130	221	No hit	No description
Pfam	PF02362	1.5E-14	132	222	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-19	132	223	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.785	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAEATAYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAAA AKPSPVKKRK ARVPLDAADA 60 VMQPLRRSGR VANLPDKPAY REEVPAFARR IRRTYGRKDL ANRVYATDEA RSYTISKAED 120 LEQELDSRFP LFIKPMTQSH VTGGFWLGLP TGFCRKHLPK RDETITLVDE DDVESNTLYL 180 AMKKGLSGGW RGFAIQHKLV DGDCLVFQLI ERTKFKVYII RASSYYENED *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G076800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065602	0.0	BT065602.1 Zea mays full-length cDNA clone ZM_BFb0334P07 mRNA, complete cds.
GenBank	JX428514	0.0	JX428514.1 Zea mays subsp. mays clone pUT3113 ABI51 ABI3VP1 type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445218.1	1e-171	B3 domain-containing protein Os06g0194400
Refseq	XP_021320220.1	1e-171	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-119	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1Z5R8I7	1e-169	A0A1Z5R8I7_SORBI; Uncharacterized protein
STRING	Sb07g006170.1	1e-170	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-61	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.007G076800.2.p
Entrez Gene	8085160

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]