PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G077100.1.p
Common NameSb07g006195, SORBIDRAFT_07g006195
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 219aa    MW: 22393.2 Da    PI: 8.2032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G077100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-202777256
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Sobic.007G077100.1.p 27 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARRLRGP 77
                          679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-162686No hitNo description
PfamPF008474.3E-142676IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-212786IPR016177DNA-binding domain
PROSITE profilePS5103223.1692784IPR001471AP2/ERF domain
SMARTSM003801.2E-322790IPR001471AP2/ERF domain
PRINTSPR003671.2E-92839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-302986IPR001471AP2/ERF domain
PRINTSPR003671.2E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAPKRSSSPA GSSGSGVFEA AAAEQPRLRG VRKRPWGRYA AEIRDPVRKA RVWLGTFDTP  60
EQAARAYDAA ARRLRGPGAT TNYPQSSEPM APAEAPARSA SGSGSAVVHE SSLSSSSSSS  120
SSCSLLPESV TVAVTAPAPS LDLSLALPAS ASVAKTYQLF MDPTPALLPF LLPKSEEERS  180
CSGSPSSSSV VFDAAPPPVG LGLGLDLNLA LLPAEMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-211286374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.4000.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G077100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937236e-96AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445220.11e-149ethylene-responsive transcription factor 11
TrEMBLC5YIV71e-148C5YIV7_SORBI; Uncharacterized protein
STRINGSb07g006195.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-19ERF domain protein 11